Tableau information
Concept source: d3vbae_ amino acid (a.a.) range (GLY109)(GLN141)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY109) (VAL114) H1
(ASP118) (ASN123) E2
(GLY127) (ASN131) E3
(GLU136) (GLN141) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 133.7° E2
E3 25.1° 156.4° E3
E4 -154.5° -44.0° 157.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4fu4a2 : (LYS369) (ASP406) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k3wa2 : (GLN36) (ASN68) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d1czda1 : (LYS1005) (ASN1043) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage T4 [TaxId: 10665]
d2arha1 : (MSE1) (PHE53) [view usage] : d.108.1.9 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Aq_1966-like |Hypothetical protein Aq_1966 |Aquifex aeolicus [TaxId: 63363]
d1v8ca2 : (PRO97) (GLU129) [view usage] : d.129.5.1 |TBP-like |MoaD-related protein, C-terminal domain |MoaD-related protein, C-terminal domain |MoaD-related protein, C-terminal domain |Thermus thermophilus [TaxId: 274]
d2ijxa2 : (VAL204) (ALA241) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1vyjg2 : (LEU209) (ALA252) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d1vpka1 : (GLY72) (THR108) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Thermotoga maritima [TaxId: 2336]
d4cs5a2 : (CYS209) (ILE255) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]
d1vyma2 : (LEU209) (ALA252) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d3bkra_ : (THR5) (GLU55) [view usage] : d.106.1.0 |SCP-like |SCP-like |automated matches |automated matches |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d1vkda_ : (GLU270) (GLY312) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d3f1va2 : (THR142) (PRO183) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1t4ob_ : (ALA370) (ARG418) [view usage] : d.50.1.1 |dsRBD-like |dsRNA-binding domain-like |Double-stranded RNA-binding domain (dsRBD) |RNase III, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3vbae_ : (GLY109) (GLN141) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2oq4a2 : (PHE29) (LEU70) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d2ot9a1 : (GLN134) (LEU172) [view usage] : c.52.1.33 |Restriction endonuclease-like |Restriction endonuclease-like |YaeQ-like |Hypothetical protein PSPTO1487 |Pseudomonas syringae pv. tomato [TaxId: 323]
d3dlda_ : (ALA26) (LEU77) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Xanthomonas oryzae [TaxId: 64187]
d3qi0c_ : (PRO98) (GLY127) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d3p83c2 : (CYS202) (GLU243) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1b25a2 : (MET96) (ILE130) [view usage] : d.152.1.1 |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Formaldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d2g3wa1 : (SER136) (GLN178) [view usage] : c.52.1.33 |Restriction endonuclease-like |Restriction endonuclease-like |YaeQ-like |Hypothetical protein XAC2396 |Xanthomonas axonopodis pv. citri [TaxId: 92829]
d2hiic2 : (GLU199) (LEU240) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d3qi0a_ : (PRO176) (GLY205) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1d4fa1 : (VAL307) (ALA339) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |S-adenosylhomocystein hydrolase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ul1c2 : (ARG210) (ALA252) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d4jlza1 : (SER247) (SER305) [view usage] : d.218.1.15 |Nucleotidyltransferase |Nucleotidyltransferase |cGAMP synthase, cGAS N-terminal domain |cGAMP synthase, cGAS N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2okgb_ : (PRO254) (SER287) [view usage] : c.124.1.8 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |SorC sugar-binding domain-like |Central glycolytic gene regulator CggR |Bacillus subtilis [TaxId: 1423]
d3vbad_ : (GLY109) (GLN141) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2g3wb_ : (SER136) (GLN178) [view usage] : c.52.1.33 |Restriction endonuclease-like |Restriction endonuclease-like |YaeQ-like |Hypothetical protein XAC2396 |Xanthomonas axonopodis pv. citri [TaxId: 92829]
d4r7ua_ : (GLU261) (ALA298) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1ud9a2 : (ILE204) (ALA241) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Sulfolobus tokodaii [TaxId: 111955]
d2fkia1 : (ILE3) (GLU41) [view usage] : d.198.3.1 |Secretion chaperone-like |YjbR-like |YjbR-like |Hypothetical protein YjbR |Escherichia coli [TaxId: 562]
d2o3ba1 : (ASN155) (ASN227) [view usage] : d.4.1.2 |His-Me finger endonucleases |His-Me finger endonucleases |DNA/RNA non-specific endonuclease |Nuclease NucA |Nostoc sp. PCC 7120 [TaxId: 103690]
d1vkde_ : (GLU270) (GLY312) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.68, c.2, b.69, b.67, c.124, d.129, d.108, c.8, d.106, d.167, d.131, c.52, b.113, d.218, d.4, b.66, d.50, d.198, d.152