Tableau information
Concept source: d1jmxa4 amino acid (a.a.) range (GLU423)(THR484)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU423) (GLU429) H1
(GLY441) (PRO445) E2
(ASN463) (LEU470) E3
(GLN475) (THR484) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 61.9° E2
E3 -99.1° 160.7° E3
E4 65.9° -19.8° 151.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1jmxa4 : (GLU423) (THR484) [view usage] : b.1.18.14 |Immunoglobulin-like beta-sandwich |E set domains |Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 |Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 |Pseudomonas putida [TaxId: 303]
d3wwgc2 : (SER187) (PHE226) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d1dewb_ : (ASN272) (ALA317) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA repair endonuclease Hap1 |Human (Homo sapiens) [TaxId: 9606]
d1qxta_ : (GLY4) (CYS48) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d2isia_ : (ASN272) (ALA317) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qyoa_ : (SER2) (CYS48) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d4dcda_ : (PRO2) (PRO38) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Human poliovirus 1 [TaxId: 12081]
d2j43a2 : (GLY185) (ASN217) [view usage] : b.3.1.3 |Prealbumin-like |Starch-binding domain-like |PUD-like |Pullulanase PulA |Streptococcus pyogenes [TaxId: 1314]
d2fa1b_ : (LYS194) (HIS241) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Probable transcriptional regulator PhnF, receptor domain |Escherichia coli [TaxId: 562]
d3sjka_ : (PHE6) (PRO38) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human enterovirus 71 [TaxId: 39054]
d3mh9c_ : (SER173) (SER222) [view usage] : b.125.1.0 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2fa1a1 : (ALA193) (HIS241) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Probable transcriptional regulator PhnF, receptor domain |Escherichia coli [TaxId: 562]
d3mhaa_ : (ALA174) (SER222) [view usage] : b.125.1.0 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1slia1 : (ALA142) (ASP175) [view usage] : b.29.1.9 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Leech intramolecular trans-sialidase, N-terminal domain |Leech intramolecular trans-sialidase, N-terminal domain |North american leech (Macrobdella decora) [TaxId: 6405]
d4jpbw_ : (ASN64) (ILE104) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |automated matches |Thermotoga maritima [TaxId: 243274]
d1yhha_ : (SER2) (CYS48) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |automated matches |Jellyfish (Aequorea victoria) [TaxId: 6100]
d1bteb_ : (ASN17) (ASP62) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Type II activin receptor |Mouse (Mus musculus) [TaxId: 10090]
d2btvc2 : (GLY127) (GLN172) [view usage] : b.19.1.1 |Viral protein domain |Viral protein domain |Top domain of virus capsid protein |BTV vp7, central (top) domain |Bluetongue virus [TaxId: 40051]
d1de8a_ : (ASN272) (ALA317) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA repair endonuclease Hap1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.19, b.29, b.47, b.40, d.151, b.1, b.125, b.3, g.7, d.22, d.190