Tableau information
Concept source: d2inwb_ amino acid (a.a.) range (PHE66)(PRO116)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE66) (GLY79) H1
(HIS88) (TYR93) E2
(LEU97) (THR103) E3
(GLY108) (PRO116) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 143.2° E2
E3 -35.4° 160.9° E3
E4 139.9° -37.2° 161.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3lida1 : (SER83) (PRO131) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d3f1pb_ : (HIS401) (ASN463) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dwrb_ : (ARG42) (PRO89) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1u0ka2 : (THR219) (HIS271) [view usage] : d.21.1.2 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PhzC/PhzF-like |Hypothetical protein PA4716 |Pseudomonas aeruginosa [TaxId: 287]
d1jdia_ : (GLU3) (SER60) [view usage] : c.74.1.1 |AraD/HMP-PK domain-like |AraD/HMP-PK domain-like |AraD-like aldolase/epimerase |L-ribulose-5-phosphate 4-epimerase |Escherichia coli [TaxId: 562]
d1sera2 : (SER287) (ALA351) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Seryl-tRNA synthetase (SerRS) |Thermus thermophilus, strain hb27 [TaxId: 274]
d3ejxa1 : (GLY102) (MET145) [view usage] : d.21.1.1 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |Diaminopimelate epimerase |Diaminopimelate epimerase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1u0ka1 : (PRO76) (ASP121) [view usage] : d.21.1.2 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PhzC/PhzF-like |Hypothetical protein PA4716 |Pseudomonas aeruginosa [TaxId: 287]
d1wtjb_ : (LEU130) (ALA186) [view usage] : c.122.1.0 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 323]
d1xfda1 : (SER529) (ASN566) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1huxa_ : (SER81) (LYS126) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Hydroxyglutaryl-CoA dehydratase component A |Acidaminococcus fermentans [TaxId: 905]
d1jyme_ : (ASP86) (ASN138) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d4dwqa_ : (ARG42) (PRO89) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Pyrococcus horikoshii [TaxId: 53953]
d1v5va2 : (ASP172) (GLU209) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Glycine cleavage system T protein, GcvT |Pyrococcus horikoshii [TaxId: 53953]
d3mxua_ : (GLY-11) (ILE24) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d1gefb_ : (ARG3) (ILE45) [view usage] : c.52.1.18 |Restriction endonuclease-like |Restriction endonuclease-like |Hjc-like |Archaeal Holliday junction resolvase Hjc |Pyrococcus furiosus [TaxId: 2261]
d1gefe_ : (TYR2) (CYS44) [view usage] : c.52.1.18 |Restriction endonuclease-like |Restriction endonuclease-like |Hjc-like |Archaeal Holliday junction resolvase Hjc |Pyrococcus furiosus [TaxId: 2261]
d2defa_ : (ALA25) (ASN74) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Escherichia coli [TaxId: 562]
d1w61b_ : (GLY131) (ASN188) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1ikga_ : (SER261) (GLY297) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., R61 [TaxId: 1931]
d3l7ha_ : (GLY45) (GLN93) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1s16a1 : (LEU1219) (TYR1267) [view usage] : d.14.1.3 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |DNA gyrase/MutL, second domain |Topoisomerase IV subunit B |Escherichia coli [TaxId: 562]
d1wu7b2 : (GLU237) (ARG292) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d1bcpc2 : (ASN38) (ALA74) [view usage] : d.169.1.2 |C-type lectin-like |C-type lectin-like |Aerolysin/Pertussis toxin (APT) domain |Pertussis toxin, S2/S3 subunits, N-terminal domain |Bordetella pertussis [TaxId: 520]
d3liea2 : (TRP255) (SER293) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d1kija1 : (GLY221) (ALA270) [view usage] : d.14.1.3 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |DNA gyrase/MutL, second domain |DNA gyrase B |Thermus thermophilus [TaxId: 274]
d2jn7a1 : (SER41) (ARG105) [view usage] : d.110.8.1 |Profilin-like |YeeU-like |YagB/YeeU/YfjZ-like |Hypothetical protein YfjZ |Escherichia coli [TaxId: 562]
d1vloa2 : (ASN161) (LEU199) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Glycine cleavage system T protein, GcvT |Escherichia coli [TaxId: 562]
d2p7jb2 : (SER57) (PRO105) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d4cqha1 : (TRP82) (PRO128) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d2ea9a_ : (SER48) (PRO109) [view usage] : d.110.8.1 |Profilin-like |YeeU-like |YagB/YeeU/YfjZ-like |Hypothetical protein YfjZ |Escherichia coli [TaxId: 562]
d2dnsa_ : (LYS268) (LYS305) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-Amino acid amidase DaaA |Ochrobactrum anthropi [TaxId: 529]
d4dwra_ : (ARG42) (PRO89) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1esja1 : (ASP149) (HIS184) [view usage] : c.72.1.2 |Ribokinase-like |Ribokinase-like |Thiamin biosynthesis kinases |Hydroxyethylthiazole kinase (THZ kinase, ThiK) |Bacillus subtilis [TaxId: 1423]
d3uwaa_ : (LYS23) (VAL74) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Synechococcus phage [TaxId: 445686]
d1uc2a_ : (ARG42) (PRO89) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Pyrococcus horikoshii [TaxId: 53953]
d2cxha1 : (ALA131) (ALA188) [view usage] : c.51.1.2 |Anticodon-binding domain-like |Class II aaRS ABD-related |Brix domain |Probable ribosomal biogenesis protein |Aeropyrum pernix [TaxId: 56636]
d2inwb_ : (PHE66) (PRO116) [view usage] : d.110.8.1 |Profilin-like |YeeU-like |YagB/YeeU/YfjZ-like |Hypothetical protein YeeU |Shigella flexneri [TaxId: 623]
d4cs5a1 : (LEU72) (MET116) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]
d1b25a2 : (ARG35) (GLY94) [view usage] : d.152.1.1 |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Formaldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d3h82b_ : (GLN405) (ASN463) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gxka_ : (THR622) (ARG657) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d4dsda_ : (PRO98) (ASP138) [view usage] : d.98.2.0 |BLIP-like |BT0923-like |automated matches |automated matches |Bacteroides ovatus [TaxId: 411476]
d3rpha_ : (LYS167) (THR204) [view usage] : c.72.1.4 |Ribokinase-like |Ribokinase-like |YjeF C-terminal domain-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1b77a1 : (LEU57) (PRO93) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage RB69 [TaxId: 12353]
d2p7ja2 : (SER57) (PRO105) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d2p7ja2 : (GLU116) (ASP172) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d1c3qa1 : (ASP149) (HIS184) [view usage] : c.72.1.2 |Ribokinase-like |Ribokinase-like |Thiamin biosynthesis kinases |Hydroxyethylthiazole kinase (THZ kinase, ThiK) |Bacillus subtilis [TaxId: 1423]
d4k8va1 : (SER258) (GLY316) [view usage] : d.218.1.15 |Nucleotidyltransferase |Nucleotidyltransferase |cGAMP synthase, cGAS N-terminal domain |cGAMP synthase, cGAS N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1xrhc_ : (SER123) (ALA178) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |Ureidoglycolate dehydrogenase AllD |Escherichia coli [TaxId: 562]
d3lidb1 : (SER83) (PRO131) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d1u02a_ : (SER48) (ASN80) [view usage] : c.108.1.15 |HAD-like |HAD-like |Trehalose-phosphatase |Trehalose-6-phosphate phosphatase related protein |Thermoplasma acidophilum [TaxId: 2303]
d1fuga1 : (PRO15) (ASP63) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Escherichia coli [TaxId: 562]
d2inwa1 : (PHE66) (PRO116) [view usage] : d.110.8.1 |Profilin-like |YeeU-like |YagB/YeeU/YfjZ-like |Hypothetical protein YeeU |Shigella flexneri [TaxId: 623]
d1u5wb_ : (GLU52) (ARG103) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Escherichia coli [TaxId: 562]
d2p7ja1 : (TYR225) (SER267) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d3uwba_ : (LYS23) (VAL74) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Synechococcus phage [TaxId: 445686]
d2od8a2 : (ALA209) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tm2a_ : (VAL268) (LEU324) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |AI-2 receptor LsrB |Salmonella typhi [TaxId: 90370]
d2w27b2 : (PHE350) (ASP394) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |Hypothetical protein YkuI, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d1gxkd_ : (THR622) (GLY656) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d1ws1a_ : (LYS26) (ASN74) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d3lbfa_ : (THR156) (THR193) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1wooa2 : (GLY162) (LEU198) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Glycine cleavage system T protein, GcvT |Thermotoga maritima [TaxId: 2336]
d1gefa_ : (ARG3) (THR50) [view usage] : c.52.1.18 |Restriction endonuclease-like |Restriction endonuclease-like |Hjc-like |Archaeal Holliday junction resolvase Hjc |Pyrococcus furiosus [TaxId: 2261]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.3, c.108, c.66, c.93, c.72, c.74, d.104, c.55, d.169, d.14, d.261, d.110, d.98, c.51, d.21, b.84, c.122, d.250, d.167,
d.131, c.52, d.218, d.130, d.215, d.152