Tableau information
Concept source: d3so4d2 amino acid (a.a.) range (PRO138)(THR194)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO138) (GLU156) H1
(SER167) (GLU179) E2
(HIS181) (ARG186) E3
(HIS188) (THR194) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 152.0° E2
E3 -45.5° 130.8° E3
E4 -33.6° -161.7° -66.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3so4c2 : (PRO138) (THR194) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1g5ca_ : (GLU128) (GLU170) [view usage] : c.53.2.1 |Resolvase-like |beta-carbonic anhydrase, cab |beta-carbonic anhydrase, cab |beta-carbonic anhydrase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1v9sb_ : (LEU77) (PRO118) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4le5a1 : (HIS13) (SER57) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Campylobacter jejuni [TaxId: 195099]
d2kxfa1 : (GLU125) (TYR160) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3j39n_ : (LEU98) (HIS138) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d4kttb1 : (PRO30) (SER73) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d1ts5a2 : (ILE126) (ASN194) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1vsta_ : (LEU79) (PRO127) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Sulfolobus solfataricus [TaxId: 2287]
d1iooa_ : (THR133) (THR171) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Gemetophytic self-incompatibility associated SF11-RNase |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d1pjka_ : (ASN35) (THR60) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d3so4a2 : (PRO138) (THR194) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d2kcqa_ : (THR4) (ARG44) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |SRU_2040 |Salinibacter ruber DSM 13855 [TaxId: 309807]
d3vnoa_ : (GLY363) (GLY415) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
d1sr8a_ : (THR43) (LYS84) [view usage] : e.54.1.1 |CbiD-like |CbiD-like |CbiD-like |Cobalamin biosynthesis protein CbiD |Archaeoglobus fulgidus [TaxId: 2234]
d2p02a1 : (HIS51) (SER95) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d2dzda2 : (SER253) (ARG296) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d4odja1 : (HIS34) (THR78) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Cryptosporidium hominis [TaxId: 237895]
d3so4d2 : (PRO138) (THR194) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1w93a3 : (LYS338) (ARG383) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Acetyl-CoA carboxylase, BC-M subdomain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3d5ta2 : (ARG158) (GLU202) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2p50a2 : (THR275) (MET313) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Escherichia coli [TaxId: 562]
d2p02a2 : (LEU174) (VAL229) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d1tiid_ : (ASP57) (ALA98) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Heat-labile toxin |Escherichia coli, type IIB [TaxId: 562]
d3r23a1 : (ALA222) (THR263) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d2nvub1 : (LEU2361) (SER2396) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1wuua1 : (GLN8) (GLY65) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.104, d.58, i.1, d.144, b.40, d.14, c.97, c.53, d.124, c.111, c.61, d.142, d.162, d.15, d.130, e.54