Tableau information
Concept source: d4o98a_ amino acid (a.a.) range (ALA197)(GLY238)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA197) (ASN203) H1
(LYS204) (THR210) E2
(GLY217) (ALA222) E3
(HIS230) (GLY238) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -95.5° E2
E3 -119.8° -69.0° E3
E4 69.7° 86.6° 154.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3mkma_ : (VAL238) (ASP276) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Pyrimidine nucleoside hydrolase YeiK |Escherichia coli [TaxId: 562]
d2xyaa_ : (ILE86) (GLY117) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human rhinovirus sp. [TaxId: 169066]
d1lhpb_ : (PHE26) (SER59) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |Pyridoxal kinase |Sheep (Ovis aries) [TaxId: 9940]
d3u5es_ : (GLN138) (PHE171) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1ueab_ : (ASP54) (ALA86) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-1 |Human (Homo sapiens) [TaxId: 9606]
d1p9ea_ : (ASP191) (GLN246) [view usage] : d.157.1.5 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Methyl parathion hydrolase |Methyl parathion hydrolase |Pseudomonas sp. WBC-3 [TaxId: 165468]
d1iwma_ : (GLN17) (ALA48) [view usage] : b.125.1.2 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer membrane lipoprotein receptor LolB |Outer membrane lipoprotein receptor LolB |Escherichia coli [TaxId: 562]
d4en4a_ : (PHE26) (SER59) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bbt3_ : (LEU44) (ASP78) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Aphthovirus (Foot-and-mouth disease virus) coat proteins |FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
d1i1qa_ : (ALA151) (THR199) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE |Salmonella typhimurium [TaxId: 90371]
d1luzb_ : (MSE48) (VAL79) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Viral structural mimic of eIF2alpha |Vaccinia virus [TaxId: 10245]
d2masa_ : (PRO243) (ASN281) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Inosine-uridine nucleoside N-ribohydrolase, IU-NH |Crithidia fasciculata [TaxId: 5656]
d2itha_ : (ALA104) (ARG157) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Haloferax volcanii [TaxId: 2246]
d3wjta_ : (PRO16) (ALA48) [view usage] : b.125.1.2 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer membrane lipoprotein receptor LolB |Outer membrane lipoprotein receptor LolB |Escherichia coli [TaxId: 562]
d1jh6a_ : (ASP143) (PRO181) [view usage] : d.61.1.1 |LigT-like |LigT-like |tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase |tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1og6a_ : (GLN59) (ASP102) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Hypothetical oxidoreductase YdhF |Escherichia coli [TaxId: 562]
d1i7pa1 : (ILE33) (ALA62) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |cytochrome b5 reductase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1xjva2 : (VAL227) (LEU265) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Protection of telomeres protein 1, Pot1 |Human (Homo sapiens) [TaxId: 9606]
d2b1xb1 : (ALA593) (ASN625) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |Naphthalene 1,2-dioxygenase beta subunit |Rhodococcus sp. ncimb12038 [TaxId: 92694]
d1ezra_ : (PRO242) (TYR280) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Leishmania major [TaxId: 5664]
d3ue6d_ : (PRO264) (LEU297) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Vaucheria frigida [TaxId: 195983]
d3fhxb_ : (PHE26) (SER59) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4h6aa_ : (PRO-3) (PHE52) [view usage] : b.159.1.0 |AOC barrel-like |Allene oxide cyclase-like |automated matches |automated matches |Physcomitrella patens [TaxId: 145481]
d4o98a_ : (ALA197) (GLY238) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas oleovorans [TaxId: 301]
d4bcua_ : (PRO117) (ASN148) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d1hqia_ : (ASP62) (TRP88) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Phenol hydroxylase P2 protein |Pseudomonas sp., CF600 [TaxId: 306]
d2p3ha1 : (PRO68) (LEU102) [view usage] : d.145.1.4 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CorC/HlyC domain-like |Uncharacterized protein Cgl1194/Cg1349 |Corynebacterium glutamicum [TaxId: 1718]
d2fz6c_ : (GLY11) (ASP30) [view usage] : b.138.1.1 |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Hydrophobin II, HfbII |automated matches |Hypocrea jecorina [TaxId: 51453]
d1vtz0_ : (PRO117) (ASN148) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d3alsa_ : (SER56) (ASP100) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Cucumaria echinata [TaxId: 40245]
d4jlza1 : (GLY187) (PHE228) [view usage] : d.218.1.15 |Nucleotidyltransferase |Nucleotidyltransferase |cGAMP synthase, cGAS N-terminal domain |cGAMP synthase, cGAS N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1c7ga_ : (THR413) (ASP454) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |Tyrosine phenol-lyase |Erwinia herbicola [TaxId: 549]
d3bsqa_ : (THR70) (LEU104) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xzm4_ : (ASN78) (PHE103) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3w5ha1 : (ILE1005) (ALA1034) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |cytochrome b5 reductase |Pig (Sus scrofa), liver [TaxId: 9823]
d3eaaa_ : (SER67) (THR103) [view usage] : b.157.1.0 |Hcp1-like |Hcp1-like |automated matches |automated matches |Edwardsiella tarda [TaxId: 636]
d2exda1 : (THR84) (GLU105) [view usage] : b.40.12.1 |OB-fold |NfeD domain-like |NfeD domain-like |Hypothetical protein PH0471 |Pyrococcus horikoshii [TaxId: 53953]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, i.1, b.47, d.157, c.72, b.40, d.169, b.121, c.71, d.110, b.125, d.17, d.145, d.137, b.43, d.218, c.70, d.161, b.138,
b.157, b.159, d.61