Tableau information
Concept source: d1gydb_ amino acid (a.a.) range (TRP81)(LYS127)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TRP81) (SER86) H1
(ALA95) (GLN100) E2
(LEU104) (SER110) E3
(THR118) (LYS127) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 143.2° E2
E3 -28.0° 168.6° E3
E4 -161.9° -30.2° 161.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zkoa_ : (ASN26) (ALA67) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Protein H of glycine cleavage system |Thermotoga maritima [TaxId: 2336]
d3u5ce_ : (GLY186) (ARG221) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2p7le_ : (ASP14) (GLU58) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |automated matches |Listeria monocytogenes [TaxId: 169963]
d3mxua_ : (THR25) (ALA67) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d3j38e_ : (GLY186) (ARG221) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1bkoa_ : (ILE228) (VAL279) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Bacillus subtilis [TaxId: 1423]
d2hiib2 : (GLY198) (ALA242) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d3elga1 : (GLN98) (ASP136) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |Putative periplasmic protein BVU2443 |Bacteroides vulgatus [TaxId: 821]
d1fx7a3 : (ASP177) (PRO218) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Iron-dependent regulator IdeR |Mycobacterium tuberculosis [TaxId: 1773]
d4iyaa_ : (ASN187) (ARG255) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Staphylococcus phage [TaxId: 71366]
d1rwza2 : (VAL195) (ALA239) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Archaeoglobus fulgidus [TaxId: 2234]
d1dxma_ : (THR28) (SER70) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Protein H of glycine cleavage system |Pea (Pisum sativum) [TaxId: 3888]
d3lx2b2 : (VAL202) (ALA245) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]
d1914a1 : (TRP4007) (ASP4054) [view usage] : d.49.1.1 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle 9KDa protein, SRP9 |Mouse (Mus musculus) [TaxId: 10090]
d1rxma2 : (VAL195) (GLU243) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Archaeoglobus fulgidus [TaxId: 2234]
d1gydb_ : (TRP81) (LYS127) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d3dlxb1 : (THR163) (ASN193) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1lsha2 : (THR120) (ASP178) [view usage] : f.7.1.1 |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
d2io4b2 : (GLU200) (ALA242) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1p92a3 : (GLN178) (ASP215) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d2byja1 : (THR39) (PHE79) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Ornithine aminotransferase |Human (Homo sapiens) [TaxId: 9606]
d1u8rh3 : (ILE178) (PRO218) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Iron-dependent regulator IdeR |Mycobacterium tuberculosis [TaxId: 1773]
d1dmla1 : (ARG113) (ARG160) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL42 |Human herpesvirus type 1 [TaxId: 10298]
d1c0wb3 : (PHE179) (LEU214) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, i.1, b.67, d.117, c.124, d.32, d.98, b.84, d.131, b.34, f.7, f.6, d.49