Tableau information
Concept source: d1dmle1 amino acid (a.a.) range (ARG51)(LEU81)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG51) (SER57) H1
(SER57) (ASP63) E2
(GLY65) (THR71) E3
(GLU75) (LEU81) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -71.0° E2
E3 100.7° 158.3° E3
E4 -90.0° -40.1° 161.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1w6sc_ : (ASN2274) (VAL2307) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d4kt0e_ : (SER16) (ASN59) [view usage] : b.34.4.2 |SH3-like barrel |Electron transport accessory proteins |Photosystem I accessory protein E (PsaE) |Photosystem I accessory protein E (PsaE) |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1fqta_ : (SER49) (CYS71) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Rieske-type ferredoxin associated with biphenyl dioxygenase |Burkholderia cepacia [TaxId: 292]
d2j92a1 : (ASP7) (PRO44) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Foot-and-mouth disease virus [TaxId: 12110]
d2e4qc_ : (SER49) (CYS71) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |automated matches |Pseudomonas sp. [TaxId: 306]
d1e32a3 : (TYR134) (LYS164) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |Membrane fusion atpase p97 domain 2, P97-Nc |Mouse (Mus musculus) [TaxId: 10090]
d1lf6a2 : (ASP88) (LYS129) [view usage] : b.30.5.5 |Supersandwich |Galactose mutarotase-like |Bacterial glucoamylase N-terminal domain-like |Bacterial glucoamylase, N-terminal domain |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d2q07a3 : (LEU397) (GLU448) [view usage] : d.17.6.5 |Cystatin-like |Pre-PUA domain |AF0587 pre C-terminal domain-like |Uncharacterized protein AF0587 |Archaeoglobus fulgidus [TaxId: 2234]
d1l2wf_ : (GLY1) (LEU51) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d2wv4a_ : (ASP7) (PRO44) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Foot-and-mouth disease virus [TaxId: 12112]
d4efga_ : (ASP26) (ASP63) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4l60a1 : (ARG81) (ASP122) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1vboa_ : (LYS70) (GLY110) [view usage] : b.77.3.1 |beta-Prism I |Mannose-binding lectins |Mannose-binding lectins |Artocarpin |Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
d1ggpa_ : (ASP46) (GLY81) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Lectin 1 A-chain |Mongolian snake-gourd (Trichosanthes kirilowii) [TaxId: 3677]
d3ik1a_ : (GLN4) (ASP39) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d2ooyd_ : (CYS239) (MET292) [view usage] : d.353.1.1 |AMPKBI-like |AMPKBI-like |AMPKBI-like |AMP-activated protein kinase beta subunit |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1ce7a_ : (GLU48) (GLY82) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Mistletoe lectin I A-chain |European mistletoe (Viscum album) [TaxId: 3972]
d1vrsc_ : (PRO13) (TYR42) [view usage] : b.1.17.1 |Immunoglobulin-like beta-sandwich |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Escherichia coli [TaxId: 562]
d2yvjb_ : (SER49) (CYS71) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |automated matches |Pseudomonas sp. [TaxId: 306]
d2fxva_ : (MET1) (PRO32) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine phosphoribosyltransferase |Bacillus subtilis [TaxId: 1423]
d2mlla_ : (GLU48) (GLY82) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Mistletoe lectin I A-chain |European mistletoe (Viscum album) [TaxId: 3972]
d1l2wb_ : (SER3) (LEU51) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d1dmle1 : (ARG51) (LEU81) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL42 |Human herpesvirus type 1 [TaxId: 10298]
d1vbpa_ : (LYS70) (GLY110) [view usage] : b.77.3.1 |beta-Prism I |Mannose-binding lectins |Mannose-binding lectins |Artocarpin |Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
d1ggla_ : (LEU27) (PHE64) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein III |Human (Homo sapiens) [TaxId: 9606]
d3ijza_ : (GLN4) (ASP39) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d1r8wa_ : (THR421) (TRP445) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Glycerol dehydratase DhaB1 |Clostridium butyricum [TaxId: 1492]
d4akda_ : (GLN71) (GLY111) [view usage] : b.77.3.1 |beta-Prism I |Mannose-binding lectins |Mannose-binding lectins |automated matches |Artocarpus integer [TaxId: 3490]
d1w6sa_ : (ASN274) (VAL307) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d2dsod_ : (GLY277) (ASN313) [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Staphylococcus aureus [TaxId: 1280]
d2ooxb1 : (PRO233) (MET292) [view usage] : d.353.1.1 |AMPKBI-like |AMPKBI-like |AMPKBI-like |AMP-activated protein kinase beta subunit |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d4ruua_ : (ASP26) (PHE64) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z5yd_ : (PRO13) (TYR42) [view usage] : b.1.17.1 |Immunoglobulin-like beta-sandwich |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Escherichia coli [TaxId: 562]
d1qxwa_ : (PRO56) (SER108) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Staphylococcus aureus [TaxId: 1280]
d1dmla1 : (ARG51) (LEU81) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL42 |Human herpesvirus type 1 [TaxId: 10298]
d3g20a_ : (MET25) (ASN128) [view usage] : d.24.1.3 |Pili subunits |Pili subunits |Pseudopilin |automated matches |Escherichia coli O157:H7 [TaxId: 83334]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, b.30, b.47, d.117, d.165, c.7, b.60, d.127, b.1, d.17, b.77, c.61, d.131, b.34, b.33, d.24, d.198, d.31, d.353