Tableau information
Concept source: d2okda_ amino acid (a.a.) range (SER70)(THR108)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER70) (GLY76) H1
(GLY76) (GLU86) E2
(ILE92) (ASN98) E3
(PHE104) (THR108) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -132.6° E2
E3 34.1° 158.8° E3
E4 -148.7° -47.0° 154.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1znpc_ : (SER6) (GLU48) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d2arhb_ : (MSE1) (PHE53) [view usage] : d.108.1.9 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Aq_1966-like |Hypothetical protein Aq_1966 |Aquifex aeolicus [TaxId: 63363]
d2ozga2 : (PRO185) (ARG231) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase Ava4977 |Anabaena variabilis [TaxId: 1172]
d2jena_ : (VAL52) (GLY95) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Bacillus licheniformis [TaxId: 1402]
d1g8xa_ : (THR539) (ILE581) [view usage] : k.1.1.1 |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Genetically engineered molecular motor |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d2dm3a_ : (THR74) (PRO107) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1whza_ : (PRO7) (PRO42) [view usage] : d.50.3.2 |dsRBD-like |YcfA/nrd intein domain |YcfA-like |Hypothetical protein TTHA1913 |Thermus thermophilus [TaxId: 274]
d3l20b_ : (LYS95) (GLY144) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Staphylococcus aureus [TaxId: 367830]
d1e9la2 : (ALA302) (TYR336) [view usage] : d.26.3.1 |FKBP-like |Chitinase insertion domain |Chitinase insertion domain |Chitinase-like lectin ym1 |Mouse (Mus musculus) [TaxId: 10090]
d4hs5a_ : (ASP3) (GLN52) [view usage] : d.82.2.0 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |automated matches |automated matches |Psychromonas ingrahamii [TaxId: 357804]
d2g7ja1 : (PRO5) (ASN39) [view usage] : d.198.5.1 |Secretion chaperone-like |YgaC/TfoX-N like |YgaC-like |Putative cytoplasmic protein YgaC |Salmonella typhimurium [TaxId: 90371]
d4hqaa_ : (GLN75) (VAL131) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1egna_ : (ASN270) (GLN312) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d2okba_ : (SER70) (THR108) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Vaccinia virus [TaxId: 10245]
d3hksa2 : (GLY121) (GLY156) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3sg1a_ : (ARG262) (MET298) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d4lp1a_ : (ASP3) (GLN52) [view usage] : d.82.2.0 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |automated matches |automated matches |Psychromonas ingrahamii [TaxId: 357804]
d1e6vc_ : (ASP148) (GLU211) [view usage] : d.58.31.1 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase gamma chain |Methyl-coenzyme M reductase gamma chain |Methanopyrus kandleri [TaxId: 2320]
d1ko9a2 : (ARG34) (GLU70) [view usage] : d.129.1.2 |TBP-like |TATA-box binding protein-like |DNA repair glycosylase, N-terminal domain |8-oxoguanine glycosylase |Human (Homo sapiens) [TaxId: 9606]
d3hksb2 : (GLY121) (GLU154) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1mpya2 : (THR221) (PHE267) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |Catechol 2,3-dioxygenase (metapyrocatechase) |Pseudomonas putida, mt2 [TaxId: 303]
d7mdha2 : (ALA281) (LEU338) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
d1v8cb2 : (PRO98) (GLU129) [view usage] : d.129.5.1 |TBP-like |MoaD-related protein, C-terminal domain |MoaD-related protein, C-terminal domain |MoaD-related protein, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1fxta_ : (ILE7) (PRO59) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]
d3fefa2 : (GLY332) (LEU381) [view usage] : d.162.1.2 |LDH C-terminal domain-like |LDH C-terminal domain-like |AglA-like glucosidase |automated matches |Bacillus subtilis [TaxId: 1423]
d1hbmc_ : (ASP144) (GLY202) [view usage] : d.58.31.1 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase gamma chain |Methyl-coenzyme M reductase gamma chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2hr9a_ : (ARG107) (PHE163) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Human (Homo sapiens) [TaxId: 9606]
d1v8ba1 : (VAL352) (LEU384) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |S-adenosylhomocystein hydrolase |Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
d1l1pa_ : (ILE52) (PRO103) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Trigger factor PPIase domain |Escherichia coli [TaxId: 562]
d1yrea1 : (ASP54) (ASP103) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA3270 |Pseudomonas aeruginosa [TaxId: 287]
d2qzsa_ : (PRO45) (ALA84) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3mghc3 : (ILE443) (VAL493) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d1av4a3 : (TYR144) (GLY193) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Arthrobacter globiformis [TaxId: 1665]
d1c4zd_ : (ARG6) (PRO58) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch7 [TaxId: 9606]
d1jdla_ : (ASP4) (GLY35) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c2 |Rhodospirillum centenum [TaxId: 34018]
d2j4hb_ : (SER111) (PRO151) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxycytidine triphosphate deaminase (dCTP deaminase) |Escherichia coli [TaxId: 562]
d3m2vc_ : (ASP144) (GLY202) [view usage] : d.58.31.1 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase gamma chain |Methyl-coenzyme M reductase gamma chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4c4ca_ : (ASN270) (GLN312) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d1ukxa_ : (SER10) (PRO73) [view usage] : d.20.1.3 |UBC-like |UBC-like |RWD domain |EIF2-alpha kinase 4 (GCN2-like protein) |Mouse (Mus musculus) [TaxId: 10090]
d3pmna3 : (PHE444) (VAL494) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d2a1va1 : (VAL10) (ASP51) [view usage] : d.198.3.1 |Secretion chaperone-like |YjbR-like |YjbR-like |Hypothetical protein DR2400 |Deinococcus radiodurans [TaxId: 1299]
d2j4ha_ : (SER111) (PRO151) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxycytidine triphosphate deaminase (dCTP deaminase) |Escherichia coli [TaxId: 562]
d1fc5a2 : (ARG64) (MSE99) [view usage] : b.103.1.1 |MoeA N-terminal region -like |MoeA N-terminal region -like |MoeA N-terminal region -like |Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains |Escherichia coli [TaxId: 562]
d4i3rl1 : (GLU79) (ILE106) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, d.68, c.2, d.58, b.29, d.129, b.40, c.87, b.85, d.32, b.1, d.108, d.20, d.110, d.17, d.162, a.3, b.88, d.218, d.26,
d.82, d.50, d.198, k.1, b.103