Tableau information
Concept source: d1t1ra4 amino acid (a.a.) range (MET224)(GLN269)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET224) (ASN239) H1
(MET245) (PRO251) E2
(HIS256) (GLN262) E3
(GLY264) (GLN269) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 143.4° E2
E3 -44.8° 137.7° E3
E4 111.8° -57.8° 156.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4gria1 : (SER138) (ALA177) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Borrelia burgdorferi [TaxId: 224326]
d4jqia1 : (THR98) (TYR173) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2mlma_ : (TYR70) (ASP102) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d3d48r1 : (ASP53) (ASP96) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k5ha3 : (MET226) (GLN270) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d3o1ma_ : (ALA30) (SER79) [view usage] : b.82.2.10 |Double-stranded beta-helix |Clavaminate synthase-like |AlkB-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1q0ha3 : (MSE226) (GLN270) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d1r17a1 : (ASP375) (TYR424) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d2o61b1 : (SER299) (PRO349) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |p50 subunit of NF-kappa B transcription factor |Human (Homo sapiens) [TaxId: 9606]
d3lgia_ : (THR68) (ASN94) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1jvsa3 : (MSE224) (GLN269) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d1pjwa_ : (THR72) (ALA108) [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |Envelope glycoprotein |Japanese encephalitis virus [TaxId: 11072]
d3b07b_ : (PRO199) (LYS250) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d1mkma2 : (ASN167) (ILE214) [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2rala1 : (ASP375) (THR419) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d3wxrg_ : (PHE21) (ASP70) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1xbpm1 : (LEU11) (ALA57) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein L18 (L18p) |Deinococcus radiodurans [TaxId: 1299]
d2eula2 : (SER123) (GLY156) [view usage] : d.26.1.2 |FKBP-like |FKBP-like |GreA transcript cleavage factor, C-terminal domain |GreA transcript cleavage factor, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1bu6o1 : (ASP200) (GLY241) [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
d2etna2 : (SER123) (GLY156) [view usage] : d.26.1.2 |FKBP-like |FKBP-like |GreA transcript cleavage factor, C-terminal domain |GreA transcript cleavage factor, C-terminal domain |Thermus aquaticus [TaxId: 271]
d3mzgb1 : (ASP53) (ASP96) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hrxa1 : (ARG5) (VAL50) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein DIP2367 |Corynebacterium diphtheriae [TaxId: 1717]
d1zcza2 : (THR283) (GLU319) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Thermotoga maritima [TaxId: 2336]
d1i1ra3 : (PRO251) (ILE298) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d1ek5a_ : (PRO156) (GLY203) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
d3mcqa2 : (ARG271) (THR308) [view usage] : d.139.1.0 |PurM C-terminal domain-like |PurM C-terminal domain-like |automated matches |automated matches |Methylobacillus flagellatus [TaxId: 265072]
d2ftxa1 : (ASP134) (ALA174) [view usage] : d.300.1.1 |Kinetochore globular domain-like |Kinetochore globular domain |Spc25-like |Kinetochore protein Spc25 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1bqub2 : (PRO155) (ILE202) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d1t1ra4 : (MET224) (GLN269) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d1flty_ : (ASP180) (ARG224) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Second domain of the Flt-1 receptor |Human (Homo sapiens) [TaxId: 9606]
d1pvha2 : (PRO251) (ILE298) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d2o9ab_ : (PRO100) (ILE146) [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
d1md9a_ : (GLU396) (GLU426) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Dihydroxybenzoate-AMP ligase DhbE |Bacillus subtilis [TaxId: 1423]
d3khca_ : (ALA30) (SER79) [view usage] : b.82.2.10 |Double-stranded beta-helix |Clavaminate synthase-like |AlkB-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3o8yb2 : (PHE286) (PRO340) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3epub_ : (SER3) (PHE54) [view usage] : d.198.1.0 |Secretion chaperone-like |Type III secretory system chaperone-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d4mafa1 : (THR195) (ASP218) [view usage] : b.122.1.0 |PUA domain-like |PUA domain-like |automated matches |automated matches |Soybean (Glycine max) [TaxId: 3847]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.119, b.82, c.2, c.26, b.47, c.55, d.153, d.81, b.2, b.122, b.1, e.23, c.97, d.110, d.139, d.26, d.198, f.6, b.100, d.310,
d.300