Tableau information
Concept source: d2dfxe_ amino acid (a.a.) range (SER57)(ASN85)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER57) (PRO62) H1
(TYR65) (ASP70) E2
(ASP70) (GLY76) E3
(LYS80) (ASN85) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 119.6° E2
E3 65.1° -65.9° E3
E4 -106.9° 106.8° 159.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2nw0a_ : (LYS126) (LEU175) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Unidentified phage [TaxId: 38018]
d1dypa_ : (ASN244) (PRO273) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |kappa-Carrageenase, catalytic |Pseudoalteromonas carrageenovora [TaxId: 227]
d3wp4a_ : (SER178) (TYR222) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d1bxni_ : (THR15) (GLY52) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Alcaligenes eutrophus [TaxId: 106590]
d1pkfa_ : (GLY367) (ILE412) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450epok |Sorangium cellulosum [TaxId: 56]
d1o8uc_ : (THR86) (ASP142) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
d2obva2 : (ILE154) (ARG199) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bcja2 : (ASP552) (TYR580) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) |Cow (Bos taurus) [TaxId: 9913]
d1mt6a2 : (HIS283) (ARG323) [view usage] : b.85.7.1 |beta-clip |SET domain |Histone lysine methyltransferases |Histone H3 K4-specific methyltransferase SET7/9 catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1bd9a_ : (PRO79) (PRO112) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Human (Homo sapiens) [TaxId: 9606]
d1q5da_ : (GLY367) (ILE412) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450epok |Sorangium cellulosum [TaxId: 56]
d1yp6a1 : (ASN11) (GLU43) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d1q8ma_ : (LEU45) (LEU67) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |TREM-1 (triggering receptor expressed on myeloid cells 1) |Human (Homo sapiens) [TaxId: 9606]
d3v9ga_ : (SER44) (SER83) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h3ia2 : (HIS283) (ARG323) [view usage] : b.85.7.1 |beta-clip |SET domain |Histone lysine methyltransferases |Histone H3 K4-specific methyltransferase SET7/9 catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d3c2ub2 : (PRO493) (LEU537) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Selenomonas ruminantium [TaxId: 971]
d3vzja_ : (PHE146) (TRP185) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus circulans [TaxId: 1397]
d2v5hg_ : (VAL70) (ASP110) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1lvwb_ : (SER117) (GLU159) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1ktba1 : (SER338) (GLY363) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Chicken (Gallus gallus) [TaxId: 9031]
d3a4ga_ : (ALA350) (THR397) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Pseudonocardia autotrophica [TaxId: 2074]
d4v1ai_ : (THR165) (HIS217) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1lvwa_ : (SER117) (LYS160) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1vbe1_ : (THR76) (ARG109) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d1i04a_ : (ASN29) (GLU61) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d4rvea_ : (SER2) (SER35) [view usage] : c.52.1.2 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRV |Restriction endonuclease EcoRV |Escherichia coli [TaxId: 562]
d2cc3b_ : (PRO148) (ARG176) [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d4jcna_ : (ASN137) (VAL165) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d1ecba2 : (SER210) (GLN242) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glutamine PRPP amidotransferase, N-terminal domain |Escherichia coli [TaxId: 562]
d2cwpa_ : (ASP8) (GLY42) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d2b46x_ : (PHE146) (VAL182) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus circulans [TaxId: 1397]
d1mufa2 : (HIS283) (ARG323) [view usage] : b.85.7.1 |beta-clip |SET domain |Histone lysine methyltransferases |Histone H3 K4-specific methyltransferase SET7/9 catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d3a4zc_ : (ALA350) (THR397) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Pseudonocardia autotrophica [TaxId: 2074]
d3c2ua2 : (PRO493) (LEU537) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Selenomonas ruminantium [TaxId: 971]
d3v9ha_ : (SER44) (SER83) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1whma_ : (PRO36) (GLU85) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Cylindromatosis tumour-suppressor Cyld |Human (Homo sapiens) [TaxId: 9606]
d2vuja_ : (GLY157) (GLU195) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Escherichia coli [TaxId: 562]
d2fjka_ : (ASN154) (HIS191) [view usage] : c.1.10.2 |TIM beta/alpha-barrel |Aldolase |Class II FBP aldolase |automated matches |Thermus caldophilus [TaxId: 272]
d9paia_ : (ARG318) (SER362) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
d2wtra1 : (ASP44) (LEU79) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d2v5hj_ : (VAL70) (ASP110) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.104, d.58, i.1, c.68, b.29, c.82, b.47, c.14, b.40, d.153, b.60, b.121, b.85, b.1, d.17, b.55, c.52, e.1, b.34,
b.71, d.130, d.73, b.17, d.243