Tableau information
Concept source: d1nbwb_ amino acid (a.a.) range (ASP46)(HIS89)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP46) (SER58) H1
(GLY63) (SER67) E2
(GLU71) (THR75) E3
(LEU85) (HIS89) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 151.0° E2
E3 -35.4° 163.1° E3
E4 126.8° -35.2° 160.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3d7qb_ : (GLY0) (GLY56) [view usage] : d.326.1.0 |XisI-like |XisI-like |automated matches |automated matches |Nostoc punctiforme [TaxId: 272131]
d3p8ta_ : (ASP173) (TYR226) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Pyrococcus abyssi [TaxId: 29292]
d2fuea_ : (GLU68) (THR95) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2pw0b1 : (ASP125) (PHE181) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d1emsa2 : (TYR77) (LYS127) [view usage] : d.160.1.1 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Nitrilase |NIT-FHIT fusion protein, N-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2fv4b1 : (GLU157) (PRO193) [view usage] : d.300.1.2 |Kinetochore globular domain-like |Kinetochore globular domain |Spc24-like |Kinetochore protein Spc24 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1nnha_ : (SER172) (TYR226) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Hypothetical protein PF1951 |Pyrococcus furiosus [TaxId: 2261]
d2y78a_ : (GLY-7) (GLY20) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 272560]
d3eq8a1 : (PRO116) (LYS157) [view usage] : b.69.7.1 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |Prolyl oligopeptidase, N-terminal domain |Prolyl oligopeptidase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2hrua4 : (THR553) (ASP592) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 |Thermotoga maritima [TaxId: 2336]
d3o6oa_ : (PHE123) (SER159) [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2ijra1 : (SER234) (GLU276) [view usage] : e.66.1.1 |Api92-like |Api92-like |Api92-like |Hypothetical protein api92 |Yersinia pseudotuberculosis [TaxId: 633]
d1d09b1 : (ILE25) (SER67) [view usage] : d.58.2.1 |Ferredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase |Escherichia coli [TaxId: 562]
d2fuca1 : (GLU68) (THR95) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphomannomutase 1 |Human (Homo sapiens) [TaxId: 9606]
d2as0a2 : (ASP76) (ILE125) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein PH1915, middle and C-terminal domains |Pyrococcus horikoshii [TaxId: 53953]
d2dnsc_ : (GLN267) (LYS305) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-Amino acid amidase DaaA |Ochrobactrum anthropi [TaxId: 529]
d2nlvb_ : (LEU4) (ARG56) [view usage] : d.326.1.1 |XisI-like |XisI-like |XisI-like |Hypothetical protein Ava3825 |Anabaena variabilis [TaxId: 1172]
d1g81a_ : (GLY115) (PRO159) [view usage] : d.190.1.1 |Chorismate lyase-like |Chorismate lyase-like |Chorismate lyase |Chorismate lyase |Escherichia coli [TaxId: 562]
d1q89a_ : (GLN260) (TRP296) [view usage] : e.47.1.1 |39 kda initiator binding protein, IBP39, C-terminal domains |39 kda initiator binding protein, IBP39, C-terminal domains |39 kda initiator binding protein, IBP39, C-terminal domains |39 kda initiator binding protein, IBP39, C-terminal domains |Trichomonas vaginalis [TaxId: 5722]
d1s07a_ : (LEU347) (ALA377) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d2efuc_ : (GLN267) (LYS305) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-Amino acid amidase DaaA |Ochrobactrum anthropi [TaxId: 529]
d3lmsa_ : (SER14) (GLY67) [view usage] : c.56.5.0 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1whna_ : (MET372) (SER412) [view usage] : d.50.1.1 |dsRBD-like |dsRNA-binding domain-like |Double-stranded RNA-binding domain (dsRBD) |tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) |Mouse (Mus musculus) [TaxId: 10090]
d3deqa2 : (ASP319) (VAL342) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1m5yd3 : (PRO351) (LYS388) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Porin chaperone SurA, PPIase domains |Escherichia coli [TaxId: 562]
d4k4ia3 : (SER509) (ARG549) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d2nlva1 : (MSE1) (ARG56) [view usage] : d.326.1.1 |XisI-like |XisI-like |XisI-like |Hypothetical protein Ava3825 |Anabaena variabilis [TaxId: 1172]
d2evca_ : (THR38) (GLY116) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Escherichia coli [TaxId: 562]
d3d5of1 : (ILE46) (SER85) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nc7a_ : (ARG67) (ILE109) [view usage] : b.123.1.1 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Thermotoga maritima [TaxId: 2336]
d1fnha3 : (VAL227) (LYS269) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
d2p9nb_ : (GLN141) (ASP183) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin-related protein 2, Arp2 |Cow (Bos taurus) [TaxId: 9913]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.67, d.58, b.69, c.108, c.56, c.66, d.122, d.104, c.55, d.127, d.160, b.1, c.51, d.21, d.139, d.218, d.26, b.123,
d.50, d.326, e.47, d.190, d.300, e.66