Tableau information
Concept source: d4gy9a_ amino acid (a.a.) range (LEU35)(ILE70)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU35) (ILE39) H1
(GLU40) (GLU46) E2
(THR53) (PHE59) E3
(GLY64) (ILE70) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 56.2° E2
E3 104.6° 160.8° E3
E4 -98.9° -43.0° 155.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2edja_ : (THR48) (THR97) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wofa_ : (GLY11) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d1l1nb_ : (GLY3) (PRO38) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human poliovirus 1 Mahoney [TaxId: 12081]
d1lvoa_ : (GLY11) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Transmissible gastroenteritis virus [TaxId: 11149]
d3huma1 : (THR30) (ALA74) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Pencillin binding protein 4 (PbpD), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d4jhia_ : (LEU35) (ILE70) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d4m9ba_ : (ILE34) (SER72) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Peanut (Arachis hypogaea) [TaxId: 3818]
d1w61b_ : (LEU93) (MET129) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d3mmga_ : (ASN12) (ASN44) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tobacco vein mottling virus [TaxId: 12228]
d3o4gb1 : (PHE9) (GLY53) [view usage] : b.69.7.2 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |Acylamino-acid-releasing enzyme, N-terminal donain |Acylamino-acid-releasing enzyme, N-terminal donain |Aeropyrum pernix [TaxId: 56636]
d2d39c_ : (HIS297) (PRO325) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lcsa_ : (PRO4) (ASP42) [view usage] : b.20.1.1 |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |FLV receptor-binding domain |Feline leukemia virus, strain b/lambda-b1 [TaxId: 11768]
d1napa_ : (HIS35) (CYS67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Platelet basic protein, PBP |Human (Homo sapiens) [TaxId: 9606]
d1usvd_ : (CYS16) (ASP68) [view usage] : d.83.2.1 |Aha1/BPI domain-like |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4c9ia_ : (ALA35) (LYS71) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Fragaria x [TaxId: 3747]
d4az9b_ : (GLY-8) (GLU36) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1euta3 : (GLY215) (ALA250) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Micromonospora sialidase, N-terminal domain |Micromonospora viridifaciens [TaxId: 1881]
d3izbr_ : (ALA66) (TYR115) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3p54a1 : (ASN154) (CYS190) [view usage] : f.10.1.0 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |automated matches |Japanese encephalitis virus [TaxId: 11072]
d2q6ga_ : (GLY11) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d3nh2b_ : (GLY9) (VAL66) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1jlxa1 : (ASN91) (ASN123) [view usage] : b.42.3.1 |beta-Trefoil |Agglutinin |Agglutinin |Agglutinin |Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]
d3nh1c_ : (GLY9) (VAL66) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1lvod_ : (SER10) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Transmissible gastroenteritis virus [TaxId: 11149]
d4pkhj_ : (HIS56) (GLY92) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2yhha_ : (PHE4) (ARG37) [view usage] : b.89.1.0 |Cyanovirin-N |Cyanovirin-N |automated matches |automated matches |Microcystis aeruginosa [TaxId: 1126]
d4m8ua2 : (PRO523) (ILE559) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2in2a_ : (PRO2) (PRO38) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human rhinovirus 14 [TaxId: 12131]
d3nh1d_ : (GLY9) (VAL66) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d4f49a_ : (GLY11) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Porcine transmissible gastroenteritis coronavirus [TaxId: 11151]
d4gy9a_ : (LEU35) (ILE70) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1mq7a_ : (GLY66) (GLU123) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Mycobacterium tuberculosis, rv2697c [TaxId: 1773]
d4jeia_ : (ASN194) (GLY267) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Yarrowia lipolytica [TaxId: 4952]
d4pkhe_ : (HIS56) (GLY92) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d23d_ : (SER11) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Human coronavirus [TaxId: 443239]
d2q6dc_ : (SER8) (PRO39) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Infectious bronchitis virus [TaxId: 11120]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.3, c.69, b.69, i.1, b.47, d.129, c.55, d.171, b.85, b.1, b.42, d.21, d.109, b.71, d.9, d.83, f.10, b.89, d.189,
b.20