Tableau information
Concept source: d1b0oa_ amino acid (a.a.) range (ASP11)(THR49)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP11) (ALA16) H1
(THR18) (SER27) E2
(ARG40) (GLU45) E3
(GLU45) (THR49) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -113.0° E2
E3 -94.1° 152.4° E3
E4 -139.5° 96.5° 63.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zcma1 : (SER140) (LYS171) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Human (Homo sapiens), mu type [TaxId: 9606]
d1hava_ : (LYS105) (GLU139) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d2g8ea_ : (SER140) (LYS171) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Norway rat (Rattus norvegicus), mu-type [TaxId: 10116]
d2ae0x1 : (ASP261) (LEU296) [view usage] : b.52.1.4 |Double psi beta-barrel |Barwin-like endoglucanases |MLTA-like |Membrane-bound lytic murein transglycosylase A, MLTA |Escherichia coli [TaxId: 562]
d1b0oa_ : (ASP11) (THR49) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d1w9ab_ : (ALA56) (PRO90) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Rv1155 |Mycobacterium tuberculosis [TaxId: 1773]
d1e0jb_ : (GLY508) (TYR547) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Gene 4 protein (g4p, DNA primase), helicase domain |Bacteriophage T7 [TaxId: 10760]
d4dgja_ : (VAL43) (ASN81) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hq7b_ : (SER54) (ILE88) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypotheical protein CAC3491 |Clostridium acetobutylicum [TaxId: 1488]
d4lhug2 : (PRO202) (VAL236) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w4ma_ : (LEU6) (THR37) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d1bj7a_ : (ASP8) (CYS44) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Lipocalin allergen |Cow (Bos taurus), bos d 2 [TaxId: 9913]
d2hq7a1 : (SER54) (ILE88) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypotheical protein CAC3491 |Clostridium acetobutylicum [TaxId: 1488]
d4q0xl1 : (GLU84) (ILE111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2fhqa1 : (SER55) (VAL86) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Putative general stress protein BT1439 |Bacteroides thetaiotaomicron [TaxId: 818]
d4dgjc_ : (TYR44) (ASN81) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fjub3 : (ALA15) (ASP41) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Phospholipase C-beta-2 |Human (Homo sapiens) [TaxId: 9606]
d3mxbs_ : (GLU7) (LYS48) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1qa7a_ : (SER1) (LYS35) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d4l1pb_ : (PHE377) (GLY407) [view usage] : b.34.21.1 |SH3-like barrel |Plus3-like |Plus3 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3u1ua_ : (PHE377) (GLY407) [view usage] : b.34.21.1 |SH3-like barrel |Plus3-like |Plus3 |RNA polymerase-associated protein RTF1 homolog |Human (Homo sapiens) [TaxId: 9606]
d1ekbb_ : (TYR60) (ASN91) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Enteropeptidase (enterokinase light chain) |Cow (Bos taurus) [TaxId: 9913]
d3mxbr_ : (LYS7) (LYS48) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d3bp5a_ : (ARG81) (VAL111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Mouse (Mus musculus) [TaxId: 10090]
d3hnsl1 : (GLU79) (ILE106) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.47, c.37, b.60, d.3, b.1, b.45, b.52, b.55, b.34, a.4, d.95