Tableau information
Concept source: d3bqva_ amino acid (a.a.) range (SER52)(VAL103)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER52) (SER60) H1
(SER71) (SER77) E2
(GLY83) (CYS89) E3
(MET97) (VAL103) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 138.1° E2
E3 -52.1° 166.1° E3
E4 113.8° -24.9° 157.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgea4 : (ASP15) (ASN54) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Presequence protease 1, PREP1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3kkec_ : (ASP130) (LEU159) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1s6la2 : (PHE103) (PRO138) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d1ci8a_ : (ALA16) (GLU67) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Esterase EstB |Burkholderia gladioli [TaxId: 28095]
d2fv4a1 : (ASN133) (VAL173) [view usage] : d.300.1.1 |Kinetochore globular domain-like |Kinetochore globular domain |Spc25-like |Kinetochore protein Spc25 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1nepa_ : (ASP72) (ALA130) [view usage] : b.1.18.7 |Immunoglobulin-like beta-sandwich |E set domains |ML domain |Epididymal secretory protein E1 (Niemann-Pick C2 protein) |Cow (Bos taurus) [TaxId: 9913]
d1kgga_ : (GLU32) (SER70) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
d2vzoa1 : (THR158) (GLY225) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d1sbqa_ : (GLY121) (ASP163) [view usage] : c.124.1.6 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |Methenyltetrahydrofolate synthetase |5,10-methenyltetrahydrofolate synthetase homolog MPN348 |Mycoplasma pneumoniae [TaxId: 2104]
d3dcxb_ : (LEU16) (GLY58) [view usage] : b.55.1.13 |PH domain-like barrel |PH domain-like |BPHL domain |Uncharacterized protein Shew0819 |Shewanella loihica [TaxId: 359303]
d1iyba_ : (SER140) (LYS194) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |RNase NW |Nicotiana glutinosa [TaxId: 35889]
d2bkla1 : (ASP111) (ASP153) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Myxococcus xanthus [TaxId: 34]
d4dw8a_ : (ARG58) (VAL87) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d2zkrz1 : (GLY19) (ALA65) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d1ekza_ : (PRO9) (GLU54) [view usage] : d.50.1.1 |dsRBD-like |dsRNA-binding domain-like |Double-stranded RNA-binding domain (dsRBD) |Staufen, domain III |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4a1ia2 : (ASP50) (PRO80) [view usage] : b.160.1.1 |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2hipa_ : (CYS34) (SER65) [view usage] : g.35.1.1 |HIPIP (high potential iron protein) |HIPIP (high potential iron protein) |HIPIP (high potential iron protein) |HIPIP (high potential iron protein) |Methylophilus methylotrophus, strain w3a1 [TaxId: 17]
d3cw9a_ : (ASP286) (PHE329) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |4-chlorobenzoyl CoA ligase |Alcaligenes sp. AL3007 [TaxId: 206162]
d3nula_ : (SER2) (LYS43) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1yhfa1 : (ASP14) (SER54) [view usage] : b.82.1.9 |Double-stranded beta-helix |RmlC-like cupins |TM1287-like |Hypothetical protein SPy1581 |Streptococcus pyogenes [TaxId: 1314]
d3ivca_ : (GLY227) (ALA284) [view usage] : c.26.1.4 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Mycobacterium tuberculosis [TaxId: 1773]
d4k8ub_ : (SER316) (ARG368) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g2nc_ : (THR68) (ARG112) [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4mqrb_ : (THR9) (LEU58) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1oowa_ : (ASP51) (THR97) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Spinach (Spinacia oleracea) [TaxId: 3562]
d1ugja_ : (GLU38) (ARG82) [view usage] : b.41.1.3 |PRC-barrel domain |PRC-barrel domain |RIKEN cDNA 2310057j16 protein (KIAA1543) |RIKEN cDNA 2310057j16 protein (KIAA1543) |Mouse (Mus musculus) [TaxId: 10090]
d1p9ag_ : (ALA49) (LEU84) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d2vzsa4 : (THR158) (GLY225) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |Exochitosanase CsxA |Amycolatopsis orientalis [TaxId: 31958]
d4mqqb_ : (THR9) (LEU58) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1ag6a_ : (ASP51) (ASN99) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Spinach (Spinacia oleracea) [TaxId: 3562]
d2x05a1 : (THR158) (GLY225) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |Exochitosanase CsxA |Amycolatopsis orientalis [TaxId: 31958]
d1usyd_ : (LEU227) (PHE269) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
d2i54a_ : (SER58) (LEU86) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d4q14a_ : (VAL68) (ARG116) [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d1xwdf_ : (ASP212) (SER248) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Follicle-stimulating hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d4glqa_ : (GLU436) (PRO493) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d3ey6a_ : (ILE96) (ASP148) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1usyc_ : (LEU227) (PHE269) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
d1m9za_ : (LEU90) (SER127) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1roea_ : (PHE38) (ILE88) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Synechococcus elongatus [TaxId: 32046]
d1y7ma1 : (ASP50) (PRO80) [view usage] : b.160.1.1 |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |Hypothetical protein YkuD, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d1prqa_ : (TRP2) (THR38) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d2psob_ : (TYR909) (GLU958) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Star-related lipid transfer protein 13 |Human (Homo sapiens) [TaxId: 9606]
d1rfsa_ : (ALA65) (VAL106) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |ISP subunit from chloroplast cytochrome bf complex |Spinach (Spinacia oleracea) [TaxId: 3562]
d1jj2y_ : (GLY19) (ALA65) [view usage] : g.41.8.1 |Rubredoxin-like |Zn-binding ribosomal proteins |Ribosomal protein L37ae |Ribosomal protein L37ae |Haloarcula marismortui [TaxId: 2238]
d4jeia_ : (GLY44) (GLY87) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Yarrowia lipolytica [TaxId: 4952]
d3cc2z1 : (GLY43) (THR89) [view usage] : g.41.8.1 |Rubredoxin-like |Zn-binding ribosomal proteins |Ribosomal protein L37ae |Ribosomal protein L37ae |Haloarcula marismortui [TaxId: 2238]
d4dwoa_ : (ARG58) (LEU88) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1s72z_ : (GLY19) (THR65) [view usage] : g.41.8.1 |Rubredoxin-like |Zn-binding ribosomal proteins |Ribosomal protein L37ae |Ribosomal protein L37ae |Haloarcula marismortui [TaxId: 2238]
d3niwa_ : (ARG58) (VAL87) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d3f9ra_ : (ASP58) (LEU86) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1whja_ : (SER16) (PRO87) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Restin-like protein 2, Rsnl2 |Mouse (Mus musculus) [TaxId: 10090]
d3zqda2 : (ASP53) (LYS88) [view usage] : b.160.1.1 |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |automated matches |Bacillus subtilis [TaxId: 224308]
d1dcea2 : (PRO305) (CYS342) [view usage] : b.7.4.1 |C2 domain-like |Rab geranylgeranyltransferase alpha-subunit, insert domain |Rab geranylgeranyltransferase alpha-subunit, insert domain |Rab geranylgeranyltransferase alpha-subunit, insert domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.10, b.82, c.67, c.69, b.69, i.1, c.108, c.26, c.124, c.93, d.129, d.104, d.185, b.18, b.6, b.1, e.23, d.110, d.124,
b.55, b.34, b.41, d.15, b.7, b.3, d.26, b.33, d.50, g.7, g.41, g.35, b.8, d.300, d.357, b.160