Tableau information
Concept source: d1ulqc1 amino acid (a.a.) range (VAL7)(GLU49)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL7) (HIS17) E1
(GLY19) (ARG25) H2
(ARG25) (GLY42) H3
(PRO44) (GLU49) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -108.5° H2
H3 150.5° 95.0° H3
H4 -95.3° -82.9° 105.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qpea_ : (GLY256) (LEU339) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d3u5eu_ : (GLN9) (ASN52) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2vsuc_ : (ASN189) (ARG225) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
d2i9ea_ : (ASN158) (SER202) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d4g9ba_ : (GLN4) (LYS45) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2p12a1 : (ASP114) (GLY166) [view usage] : b.175.1.1 |FomD barrel-like |FomD-like |FomD-like |Hypothetical protein RHA1_ro00977 |Rhodococcus sp. RHA1 [TaxId: 101510]
d3cb2a1 : (ASP200) (TYR245) [view usage] : c.32.1.0 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1frsa_ : (MET88) (ALA124) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |fr coat protein |Bacteriophage FR [TaxId: 12017]
d4c4ta_ : (LYS3) (LYS45) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |beta-Phosphoglucomutase |Lactococcus lactis [TaxId: 1358]
d1wj9a1 : (MET1) (GLY40) [view usage] : d.58.53.1 |Ferredoxin-like |CRISPR-associated protein |CRISPR-associated protein |Hypothetical protein TTHB192 |Thermus thermophilus [TaxId: 274]
d3kbab_ : (ASN828) (SER902) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Progesterone receptor |Human (Homo sapiens) [TaxId: 9606]
d2wuab1 : (ASP49) (GLY96) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Common sunflower (Helianthus annuus) [TaxId: 4232]
d1o03a_ : (LYS3) (LYS45) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |beta-Phosphoglucomutase |Lactococcus lactis [TaxId: 1358]
d1ep9a1 : (GLY39) (LYS80) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Human (Homo sapiens) [TaxId: 9606]
d1h3fb2 : (PRO355) (ARG394) [view usage] : d.66.1.4 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain |Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d1isfa_ : (LYS73) (ALA106) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |Bone marror stromal cell antigen 1, BST-1/CD157 (ADP ribosyl cyclase-2) |Human (Homo sapiens) [TaxId: 9606]
d1ulqc1 : (VAL7) (GLU49) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoadipyl CoA thiolase |Thermus thermophilus [TaxId: 274]
d2i9eb_ : (ASN158) (SER202) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d4rjza_ : (ASN300) (ALA364) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d1y8ba_ : (LEU10) (GLU87) [view usage] : c.1.13.1 |TIM beta/alpha-barrel |Malate synthase G |Malate synthase G |Malate synthase G |Escherichia coli [TaxId: 562]
d2y8wa1 : (GLY-3) (GLY40) [view usage] : d.58.53.0 |Ferredoxin-like |CRISPR-associated protein |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2w8ya_ : (ASN828) (SER902) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3exee_ : (GLN256) (ALA326) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d4a19m_ : (ASN14) (GLU54) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1ipba_ : (TRP113) (ASP148) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Human (Homo sapiens) [TaxId: 9606]
d3fcya_ : (SER123) (VAL176) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Thermoanaerobacterium sp. [TaxId: 60708]
d1or6b_ : (ARG24) (GLU76) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Heme-based aerotactic transducer HemAT, sensor domain |Bacillus subtilis [TaxId: 1423]
d2ycpa_ : (ALA344) (GLY387) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d1qnoa_ : (PHE110) (PHE162) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-mannanase |Trichoderma reesei [TaxId: 51453]
d1ulqa1 : (GLU3) (GLU49) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoadipyl CoA thiolase |Thermus thermophilus [TaxId: 274]
d2wuaa1 : (ASP49) (GLY96) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Common sunflower (Helianthus annuus) [TaxId: 4232]
d1h3ea2 : (PRO355) (ARG394) [view usage] : d.66.1.4 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain |Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d3dxmb_ : (HIS300) (PHE340) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin-related protein 2, Arp2 |Cow (Bos taurus) [TaxId: 9913]
d1kfia1 : (GLY25) (PRO57) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d4ubvb1 : (VAL7) (GLU53) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1kfqa1 : (GLY25) (PRO57) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, d.58, i.1, c.108, c.14, c.23, c.36, c.55, c.95, c.32, a.123, c.78, f.24, a.1, d.85, d.86, c.84,
d.66, b.175