Tableau information
Concept source: d1sqya2 amino acid (a.a.) range (CYS649)(LYS691)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(CYS649) (GLY655) E1
(THR658) (GLY664) H2
(PRO665) (LYS676) H3
(PRO681) (LYS691) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 110.3° H2
H3 -93.1° 104.9° H3
H4 -39.6° -133.2° -110.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1oyya1 : (LYS408) (GLY451) [view usage] : a.4.5.43 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RecQ helicase DNA-binding domain-like |DNA helicase RecQ DNA-binding domain |Escherichia coli [TaxId: 562]
d3cl1a_ : (LEU320) (ARG349) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Rhizobium loti [TaxId: 381]
d4n91a_ : (GLY292) (GLU334) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Anaerococcus prevoti [TaxId: 525919]
d1n76a2 : (CYS649) (LYS691) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d3f6ma_ : (ALA0) (ALA73) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |automated matches |Yersinia pestis [TaxId: 214092]
d1sqya2 : (CYS649) (LYS691) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d3oa1b_ : (GLY221) (GLY254) [view usage] : d.293.1.1 |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |automated matches |Rabies virus strain pasteur vaccin [TaxId: 103929]
d1ftha_ : (GLY1006) (LEU1043) [view usage] : d.150.1.2 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |Holo-(acyl carrier protein) synthase ACPS |Holo-(acyl carrier protein) synthase ACPS |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1z4ea1 : (HIS4) (ARG31) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Transcriptional regulator BH1968 |Bacillus halodurans [TaxId: 86665]
d3r6sa1 : (ALA104) (ILE145) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1iv2a_ : (ARG2) (GLU71) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Thermus thermophilus [TaxId: 274]
d2avnb_ : (HIS0) (GLU38) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical methyltransferase TM1389 |Thermotoga maritima [TaxId: 2336]
d2bjjx2 : (CYS650) (LYS692) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3of1a1 : (LEU270) (TYR293) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3skpa_ : (CYS637) (CYS674) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lfha2 : (CYS649) (LYS691) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d1wkvb_ : (GLY63) (THR97) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Aeropyrum pernix [TaxId: 56636]
d1lfga2 : (CYS649) (LYS691) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d2j4ra2 : (LYS234) (VAL270) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |automated matches |Aquifex aeolicus [TaxId: 63363]
d3fsha_ : (GLY86) (GLY164) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1knka_ : (MET1) (ALA71) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Escherichia coli [TaxId: 562]
d3cl1b_ : (SER318) (ARG349) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Rhizobium loti [TaxId: 381]
d2wzla_ : (GLY222) (GLY255) [view usage] : d.293.1.0 |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |automated matches |automated matches |Mokola virus [TaxId: 12538]
d1ieja_ : (ALA251) (LEU298) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d1jx0a_ : (ALA176) (GLY216) [view usage] : d.36.1.1 |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1tiqa_ : (SER2) (SER43) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Protease synthase and sporulation negative regulatory protein PaiA |Bacillus subtilis [TaxId: 1423]
d3cwvb2 : (THR300) (ARG355) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 246197]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.94, c.79, c.66, c.55, d.14, d.108, d.20, d.79, a.4, d.150, d.36, d.293