Tableau information
Concept source: d4h3zb_ amino acid (a.a.) range (SER0)(ASN37)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER0) (VAL6) E1
(PHE9) (TRP19) H2
(ILE21) (GLU29) H3
(TYR31) (ASN37) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 151.7° H2
H3 -110.0° -95.4° H3
E4 -15.5° -163.7° -94.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1tvkb1 : (ARG62) (SER95) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin beta-subunit |Cow (Bos taurus) [TaxId: 9913]
d1lb8b_ : (GLU132) (THR173) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d1ggoa2 : (LYS406) (ARG428) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d2d8ua1 : (ASN20) (PRO47) [view usage] : g.43.1.1 |B-box zinc-binding domain |B-box zinc-binding domain |B-box zinc-binding domain |Ubiquitin ligase trim63 |Human (Homo sapiens) [TaxId: 9606]
d4rk0d_ : (THR242) (ASP276) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d4oxra_ : (LYS31) (VAL57) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus pseudintermedius [TaxId: 283734]
d4h3zb_ : (SER0) (ASN37) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d1m6ja_ : (GLU41) (ALA71) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1vjta1 : (MSE1) (ASP38) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Putative alpha-glucosidase TM0752 |Thermotoga maritima [TaxId: 2336]
d2fb5a1 : (GLY93) (ASN142) [view usage] : d.320.1.1 |YojJ-like |YojJ-like |YojJ-like |Hypothetical protein BC4920 (YojJ) |Bacillus cereus [TaxId: 1396]
d2z1aa1 : (ALA472) (GLY503) [view usage] : d.114.1.1 |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |Thermus thermophilus [TaxId: 274]
d2egma_ : (LYS29) (PRO56) [view usage] : g.43.1.0 |B-box zinc-binding domain |B-box zinc-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ffba1 : (ARG65) (LYS97) [view usage] : c.32.1.0 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4i4tb1 : (ARG64) (SER97) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1wvja_ : (GLU132) (THR173) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d2gi4a_ : (MET1) (ALA40) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
d2lnta_ : (PRO71) (VAL110) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2btqa1 : (ASP132) (PRO177) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin alpha-subunit |Prosthecobacter dejongeii [TaxId: 48465]
d4h3ya_ : (SER0) (ASN37) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d1zg3a2 : (GLU201) (GLN231) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d2fxia_ : (LYS4) (ILE39) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Staphylococcus aureus [TaxId: 1280]
d1pcaa2 : (ILE62) (ILE109) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Pig (Sus scrofa) [TaxId: 9823]
d1ou0a_ : (CYS71) (TYR98) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d4lnub1 : (ARG64) (SER97) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d3taob_ : (PRO5) (PRO46) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2io9a1 : (ASN436) (GLU488) [view usage] : c.30.1.7 |PreATP-grasp domain |PreATP-grasp domain |Glutathionylspermidine synthase substrate-binding domain-like |Glutathionylspermidine synthase, synthetase domain |Escherichia coli [TaxId: 562]
d1xtya_ : (LYS3) (LYS60) [view usage] : c.131.1.0 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |automated matches |automated matches |Pyrococcus abyssi [TaxId: 29292]
d3ta6a_ : (PRO5) (PRO46) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3rycb1 : (ARG64) (SER97) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d3gvga_ : (PRO5) (PRO46) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4rk0a_ : (THR242) (ASP276) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d2eyqb4 : (THR280) (THR341) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d1uwya2 : (PRO57) (SER107) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase M, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, c.56, c.92, c.66, c.93, c.23, c.37, c.47, c.32, c.8, c.116, c.30, c.44, c.131, d.320, g.43, d.114