Tableau information
Concept source: d2od6c1 amino acid (a.a.) range (LYS5)(ARG50)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS5) (ILE15) E1
(ASP17) (ALA31) H2
(LYS36) (GLY42) H3
(LEU44) (ARG50) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 140.7° H2
H3 151.3° -66.8° H3
E4 -25.5° -156.9° 132.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ahme1 : (GLN162) (LEU194) [view usage] : d.302.1.1 |Coronavirus NSP8-like |Coronavirus NSP8-like |Coronavirus NSP8-like |Nonstructural protein 8, NSP8 |SARS coronavirus [TaxId: 227859]
d2qlwa_ : (GLU4) (ASP48) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhizobium leguminosarum [TaxId: 386]
d2dmaa_ : (LYS121) (LEU152) [view usage] : d.81.4.1 |FwdE/GAPDH domain-like |V-type ATPase subunit E-like |V-type ATPase subunit E |V-type ATP synthase subunit E |Pyrococcus horikoshii [TaxId: 53953]
d1gzda_ : (THR149) (SER184) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Pig (Sus scrofa) [TaxId: 9823]
d1apaa_ : (ILE9) (ASP61) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Pokeweed antiviral protein alpha |Pokeweed (Phytolacca americana) [TaxId: 3527]
d1knva_ : (ALA193) (SER241) [view usage] : c.52.1.7 |Restriction endonuclease-like |Restriction endonuclease-like |Cfr10I/Bse634I |Restriction endonuclease Bse634I |Bacillus stearothermophilus [TaxId: 1422]
d2zkqc1 : (THR44) (LYS90) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |Ribosomal protein S3 N-terminal domain |Dog (Canis familiaris) [TaxId: 9615]
d2c1ca1 : (VAL61) (VAL110) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase B |Corn earworm (Helicoverpa zea) [TaxId: 7113]
d1nfta_ : (ALA249) (PRO311) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d3e4dd_ : (PRO44) (ASP80) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2dm9a1 : (LYS121) (LEU152) [view usage] : d.81.4.1 |FwdE/GAPDH domain-like |V-type ATPase subunit E-like |V-type ATPase subunit E |V-type ATP synthase subunit E |Pyrococcus horikoshii [TaxId: 53953]
d3lo3a_ : (ALA52) (GLY92) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Colwellia psychrerythraea [TaxId: 167879]
d1x4na1 : (SER13) (ALA51) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Far upstream binding element, FBP |Mouse (Mus musculus) [TaxId: 10090]
d3groa_ : (ASN110) (GLY140) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kr5b_ : (LYS368) (THR397) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d1e3wd_ : (PHE159) (LEU200) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Type II 3-hydroxyacyl-CoA dehydrogenase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1p8la2 : (PHE98) (LEU137) [view usage] : d.142.2.1 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |ATP-dependent DNA ligase catalytic domain |ATP-dependent DNA ligase, N-terminal domain |Chlorella virus PBCV-1 [TaxId: 10506]
d1lbba_ : (LYS4) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d1zj8a4 : (ARG166) (SER213) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d1bg6a2 : (MET159) (GLU187) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |N-(1-D-carboxylethyl)-L-norvaline dehydrogenase |Arthrobacter, strain 1c [TaxId: 1663]
d4mcbb_ : (MET1) (CYS35) [view usage] : c.116.1.4 |alpha/beta knot |alpha/beta knot |tRNA(m1G37)-methyltransferase TrmD |automated matches |Haemophilus influenzae [TaxId: 71421]
d1k8kb1 : (HIS300) (ARG343) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin-related protein 2, Arp2 |Cow (Bos taurus) [TaxId: 9913]
d1mjna_ : (ILE255) (LEU289) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d2bhnc2 : (ARG20) (GLN47) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d1l2fa2 : (VAL231) (LYS274) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |Transcription factor NusA, C-terminal domains |Thermotoga maritima [TaxId: 2336]
d2pd1a1 : (LYS3) (GLY46) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE2512 |Nitrosomonas europaea [TaxId: 915]
d2pd1a1 : (SER48) (LEU94) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE2512 |Nitrosomonas europaea [TaxId: 915]
d1aiva2 : (THR591) (LYS646) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d1nnta_ : (ALA249) (PRO311) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d3guyg_ : (GLU177) (ARG220) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 419109]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.94, c.2, d.58, c.56, c.80, d.165, c.55, d.81, c.62, c.116, d.134, d.142, c.52, d.52, d.51, d.302