Tableau information
Concept source: d1mx1a_ amino acid (a.a.) range (VAL1165)(SER1221)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL1165) (ARG1171) E1
(LEU1172) (PHE1178) H2
(ASN1188) (ASP1203) H3
(VAL1215) (SER1221) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 71.0° H2
H3 145.5° 92.7° H3
E4 -58.0° -115.3° 151.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3dzca_ : (ASP56) (HIS94) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |automated matches |Vibrio cholerae [TaxId: 666]
d2gvhb1 : (HIS13) (THR61) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Probable acyl-CoA hydrolase AGR_L_2016 |Agrobacterium tumefaciens [TaxId: 358]
d1w36b2 : (TRP811) (THR869) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Exodeoxyribonuclease V beta chain (RecB), N-terminal domain |Escherichia coli [TaxId: 562]
d4bnda_ : (MET131) (VAL174) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d1zx1b_ : (SER145) (ALA185) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d2iy5b2 : (GLU402) (GLY437) [view usage] : a.6.1.1 |Putative DNA-binding domain |Putative DNA-binding domain |Domains B1 and B5 of PheRS-beta, PheT |Domains B1 and B5 of PheRS-beta, PheT |Thermus thermophilus [TaxId: 274]
d3lupa_ : (LYS35) (GLN63) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Streptococcus agalactiae [TaxId: 208435]
d1iwga3 : (ASN623) (ASN667) [view usage] : d.58.44.1 |Ferredoxin-like |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Escherichia coli [TaxId: 562]
d3fw1a_ : (SER145) (ALA185) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d1z7wa1 : (GLU242) (ILE294) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1v4vb_ : (ARG61) (HIS98) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d1t3na1 : (HIS354) (CYS411) [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DNA polymerase iota |Human (Homo sapiens) [TaxId: 9606]
d3jzda_ : (ALA13) (THR43) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 264198]
d117ea_ : (GLU150) (ALA204) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2gvhc1 : (ILE7) (THR61) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Probable acyl-CoA hydrolase AGR_L_2016 |Agrobacterium tumefaciens [TaxId: 358]
d2gvha1 : (HIS13) (THR61) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Probable acyl-CoA hydrolase AGR_L_2016 |Agrobacterium tumefaciens [TaxId: 358]
d4o8ma_ : (PHE239) (ASP292) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d4o8mg_ : (PHE239) (ASP292) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1xfja_ : (ARG125) (PRO165) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein CC0490 |Caulobacter crescentus [TaxId: 155892]
d2q3da_ : (GLU239) (VAL291) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1w2bw_ : (VAL9) (PRO52) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d1e6aa_ : (GLU150) (ALA204) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1squb_ : (SER55) (GLY121) [view usage] : d.252.1.1 |CheC-like |CheC-like |CheC-like |Chemotaxis protein CheX |Thermotoga maritima [TaxId: 2336]
d1hyqa_ : (VAL80) (ALA118) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Cell division regulator MinD |Archaeoglobus fulgidus [TaxId: 2234]
d1e1da_ : (VAL285) (THR310) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d1huja_ : (GLU150) (ALA204) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2joya1 : (ASP58) (LYS90) [view usage] : b.34.5.7 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal protein L14e |Ribosomal protein L14e |Sulfolobus solfataricus [TaxId: 2287]
d1o58a_ : (GLU228) (ASP282) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thermotoga maritima [TaxId: 2336]
d1xkob_ : (SER55) (GLY121) [view usage] : d.252.1.1 |CheC-like |CheC-like |CheC-like |Chemotaxis protein CheX |Thermotoga maritima [TaxId: 2336]
d1t82c_ : (GLU33) (LEU90) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Putative thioesterase SO4397 |Shewanella oneidensis [TaxId: 70863]
d1c92a_ : (THR10) (ASP32) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
d1ve1a1 : (GLY236) (ILE287) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thermus thermophilus [TaxId: 274]
d1jj2w_ : (ARG8) (PRO52) [view usage] : d.29.1.1 |Ribosomal protein L31e |Ribosomal protein L31e |Ribosomal protein L31e |Ribosomal protein L31e |Haloarcula marismortui [TaxId: 2238]
d1p4ra2 : (ARG390) (ASN438) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Human (Homo sapiens) [TaxId: 9606]
d1yppa_ : (GLU150) (ALA204) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3f9ra_ : (MET125) (GLY174) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1vkhb_ : (THR65) (HIS109) [view usage] : c.69.1.32 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Putative serine hydrolase Ydr428c |Putative serine hydrolase Ydr428c |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, d.58, i.1, c.108, c.79, e.22, c.23, b.40, c.37, d.194, c.87, c.97, d.38, b.34, e.26, c.119, d.240, a.6,
d.252, d.29