Tableau information
Concept source: d3o28a_ amino acid (a.a.) range (VAL6)(ILE55)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL6) (ILE11) E1
(GLU13) (MET18) H2
(GLY34) (HIS46) H3
(LYS50) (ILE55) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -143.2° H2
H3 162.6° -53.4° H3
E4 -22.3° -137.8° 157.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3bwya_ : (ASP136) (ASN170) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Human (Homo sapiens) [TaxId: 9606]
d1d0na3 : (GLY313) (PRO354) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Gelsolin |Horse (Equus caballus) [TaxId: 9796]
d2d0pd_ : (ILE10) (PRO42) [view usage] : c.51.3.2 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Dehydratase-reactivating factor beta subunit |automated matches |Klebsiella oxytoca [TaxId: 571]
d1wvaa1 : (THR7) (GLY51) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Human (Homo sapiens) [TaxId: 9606]
d3t9xb_ : (LYS4) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d1np3a2 : (ASP74) (ALA106) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Class I ketol-acid reductoisomerase (KARI) |Pseudomonas aeruginosa [TaxId: 287]
d3pd8c_ : (LYS1) (ILE52) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d3cg3a_ : (ALA28) (SER68) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1eh5a_ : (TYR109) (GLY140) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |Palmitoyl protein thioesterase 1 |Cow (Bos taurus) [TaxId: 9913]
d2cl5a_ : (ASP136) (ASN170) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ubta_ : (PHE106) (LEU141) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |automated matches |Haemophilus aegyptius [TaxId: 197575]
d2y7kd_ : (ARG97) (ARG132) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d1sgja_ : (PRO123) (ALA153) [view usage] : c.1.12.5 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |HpcH/HpaI aldolase |Citrate lyase, beta subunit |Deinococcus radiodurans [TaxId: 1299]
d4u1oa_ : (VAL6) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d3r7xa_ : (VAL6) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rzva_ : (MSE1) (PRO42) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Agrobacterium tumefaciens [TaxId: 358]
d3feua_ : (PRO22) (ASN60) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Vibrio fischeri [TaxId: 312309]
d1nyqa1 : (GLN547) (ASP580) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Threonyl-tRNA synthetase (ThrRS), C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d2d0pb_ : (ILE10) (PRO42) [view usage] : c.51.3.2 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Dehydratase-reactivating factor beta subunit |automated matches |Klebsiella oxytoca [TaxId: 571]
d1a95b_ : (GLY31) (ASP66) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine-guanine PRTase (XPRTase) |Escherichia coli [TaxId: 562]
d1h1da_ : (ASP136) (ASN170) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3k7sa_ : (ARG4) (TYR35) [view usage] : c.121.1.0 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d2fyib_ : (GLY93) (GLN128) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d4f22a_ : (ILE6) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2y7ka_ : (ARG97) (ARG132) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d3mbia2 : (VAL157) (ASP188) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d4itya_ : (LYS13) (ARG58) [view usage] : c.42.1.0 |Arginase/deacetylase |Arginase/deacetylase |automated matches |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d3mgaa2 : (PRO200) (ASP238) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d1ftjb_ : (VAL6) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4g4pa_ : (LYS131) (ASP160) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d1jfla2 : (LYS117) (PRO147) [view usage] : c.78.2.1 |ATC-like |Aspartate/glutamate racemase |Aspartate/glutamate racemase |Aspartate racemase |Pyrococcus horikoshii OT3 [TaxId: 70601]
d2z6aa_ : (LYS114) (VAL151) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus parahaemolyticus [TaxId: 735]
d1yzfa1 : (ARG2) (MET47) [view usage] : c.23.10.5 |Flavodoxin-like |SGNH hydrolase |TAP-like |Lipase/acylhydrolase |Enterococcus faecalis [TaxId: 1351]
d1rzua_ : (MET1) (PRO42) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Agrobacterium tumefaciens [TaxId: 358]
d3kgca_ : (VAL6) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d2qzsa_ : (MET1) (PRO42) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1xwdf_ : (LYS146) (ASN178) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Follicle-stimulating hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d3r7xb_ : (VAL6) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2y7kb_ : (ARG97) (ARG132) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d1a97b_ : (GLY31) (ILE60) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine-guanine PRTase (XPRTase) |Escherichia coli [TaxId: 562]
d2onke1 : (VAL33) (ALA67) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d3anxa_ : (ASP153) (GLN194) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3qjga_ : (GLU3) (ALA36) [view usage] : c.34.1.0 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1hf2b2 : (GLY42) (GLY79) [view usage] : c.102.1.1 |Cell-division inhibitor MinC, N-terminal domain |Cell-division inhibitor MinC, N-terminal domain |Cell-division inhibitor MinC, N-terminal domain |Cell-division inhibitor MinC, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d2fyia1 : (GLY93) (GLN128) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d3gbrb2 : (LEU189) (TYR217) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d4u2ra_ : (LYS4) (ILE55) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d1xhya_ : (LYS1) (ILE52) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d2ji6a3 : (LYS418) (GLU450) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Oxalyl-CoA decarboxylase |Oxalobacter formigenes [TaxId: 847]
d2dt5a2 : (GLU142) (PHE171) [view usage] : c.2.1.12 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Transcriptional repressor Rex, C-terminal domain |Transcriptional repressor Rex, C-terminal domain |Thermus aquaticus [TaxId: 271]
d2onkj_ : (VAL33) (ALA67) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d1a8pa2 : (LYS108) (HIS142) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Azotobacter vinelandii [TaxId: 354]
d1e8cb1 : (ASP35) (GLU65) [view usage] : c.98.1.1 |MurF and HprK N-domain-like |MurE/MurF N-terminal domain |MurE/MurF N-terminal domain |UDP-N-acetylmuramyl tripeptide synthetase MurE |Escherichia coli [TaxId: 562]
d1yqga2 : (ASP59) (VAL87) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Pyrroline-5-carboxylate reductase ProC |Neisseria meningitidis, serogroup B [TaxId: 487]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.69, c.94, c.2, c.66, c.42, c.23, c.36, c.47, c.87, c.78, c.25, c.121, c.51, c.61, d.109, c.34, c.27, c.98,
c.102