Tableau information
Concept source: d2pnkf_ amino acid (a.a.) range (TYR219)(ILE259)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR219) (PRO225) E1
(SER234) (CYS243) H2
(LEU245) (HIS251) H3
(ILE253) (ILE259) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -160.9° H2
H3 -152.2° -29.0° H3
E4 -19.5° -159.6° -135.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1t09a_ : (PRO206) (GLU247) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |NADP-dependent isocitrate dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d2h0ha1 : (PRO98) (VAL137) [view usage] : c.47.1.9 |Thioredoxin fold |Thioredoxin-like |DsbC/DsbG C-terminal domain-like |Thiol:disulfide interchange protein DsbG, C-terminal domain |Escherichia coli [TaxId: 562]
d2qeel_ : (TYR219) (ILE259) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d4mgga2 : (PRO288) (ASN323) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Labrenzia aggregata [TaxId: 384765]
d3g1ka_ : (PHE105) (GLY150) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d3d6nb2 : (LEU147) (GLY179) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2pnkc_ : (TYR219) (ILE259) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d2luoa_ : (LEU5) (GLY44) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1pj4a2 : (THR250) (ASP279) [view usage] : c.58.1.3 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Malic enzyme N-domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d2pnkh_ : (TYR219) (ILE259) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d1sbzd_ : (GLY80) (PRO125) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Probable aromatic acid decarboxylase Pad1 |Escherichia coli O157:H7 [TaxId: 83334]
d4h7pb1 : (VAL4) (ILE42) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Leishmania major [TaxId: 347515]
d4egja1 : (GLY10) (ASP48) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d3puha1 : (PRO250) (GLY283) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d3ojca2 : (ILE121) (PRO150) [view usage] : c.78.2.0 |ATC-like |Aspartate/glutamate racemase |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2djaa1 : (ASN30) (ASN59) [view usage] : g.43.1.1 |B-box zinc-binding domain |B-box zinc-binding domain |B-box zinc-binding domain |Midline-2 |Human (Homo sapiens) [TaxId: 9606]
d2nzma_ : (VAL32) (GLY60) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2h3ha_ : (GLY124) (ASP162) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1b33n_ : (GLY1) (LEU55) [view usage] : d.30.1.1 |Allophycocyanin linker chain (domain) |Allophycocyanin linker chain (domain) |Allophycocyanin linker chain (domain) |Allophycocyanin linker chain (domain) |Mastigocladus laminosus [TaxId: 83541]
d1akma1 : (LYS45) (GLY77) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Escherichia coli [TaxId: 562]
d3fw1a_ : (LYS3) (LEU41) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d3f6ya_ : (ASP202) (HIS244) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d3cgwa_ : (MSE1) (THR32) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d4p08a1 : (LEU252) (GLY283) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d1dlia2 : (MET1) (ILE30) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |UDP-glucose dehydrogenase (UDPGDH) |Streptococcus pyogenes [TaxId: 1314]
d3v9ga_ : (TYR427) (VAL457) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sxjd2 : (TYR134) (CYS170) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3srxb_ : (ALA114) (ASN142) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d4h7pa1 : (VAL4) (ILE42) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Leishmania major [TaxId: 347515]
d4p91a_ : (ASN261) (THR290) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2pnka1 : (TYR219) (ILE259) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d4b4da2 : (ARG109) (VAL145) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1wp4a2 : (GLU2) (ARG31) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Hydroxyisobutyrate dehydrogenase |Thermus thermophilus [TaxId: 274]
d1dxha1 : (ASN47) (ASP78) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Pseudomonas aeruginosa [TaxId: 287]
d13pka_ : (ARG105) (GLU132) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2fcjb_ : (ASP52) (ASP83) [view usage] : c.136.1.1 |Toprim domain |Toprim domain |Toprim domain |Hypothetical protein RBSTP2199 |Bacillus stearothermophilus [TaxId: 1422]
d3a3ua_ : (LEU4) (GLU37) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein TTHA1568 |Thermus thermophilus [TaxId: 274]
d3afma_ : (SER143) (THR196) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sphingomonas sp. [TaxId: 90322]
d1o5ia_ : (ASP71) (ILE126) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |beta-keto acyl carrier protein reductase |Thermotoga maritima [TaxId: 2336]
d4mdha1 : (ILE4) (ILE42) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
d2ynwb_ : (GLY105) (SER139) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1b5ta_ : (VAL56) (CYS91) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Escherichia coli [TaxId: 562]
d3v9ha_ : (TYR427) (VAL457) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d5tc1 : (LYS6) (LEU44) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2bgla_ : (LYS145) (TYR198) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mayapple (Podophyllum peltatum) [TaxId: 35933]
d1wjka_ : (ARG14) (ASP50) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin-like structure containing protein C330018D20Rik |Mouse (Mus musculus) [TaxId: 10090]
d2pnkd_ : (TYR219) (ILE259) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d1vw44_ : (ARG24) (MET64) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1gq2a2 : (CYS250) (ASP279) [view usage] : c.58.1.3 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Malic enzyme N-domain |Mitochondrial NAD(P)-dependent malic enzyme |Domestic pigeon (Columba livia) [TaxId: 8932]
d4a3sa_ : (LYS2) (TYR38) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |automated matches |Bacillus subtilis [TaxId: 1423]
d2vkda1 : (LYS96) (ASP132) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Cytotoxin L |Clostridium sordellii [TaxId: 1505]
d2h0ia1 : (PRO98) (GLY136) [view usage] : c.47.1.9 |Thioredoxin fold |Thioredoxin-like |DsbC/DsbG C-terminal domain-like |Thiol:disulfide interchange protein DsbG, C-terminal domain |Escherichia coli [TaxId: 562]
d1jaxa_ : (MET1) (ARG32) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Coenzyme F420H2:NADP+ oxidoreductase (FNO) |Archaeoglobus fulgidus [TaxId: 2234]
d3hk8a_ : (TYR219) (ILE259) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d3v9gc_ : (TYR427) (VAL457) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cvea2 : (VAL128) (THR158) [view usage] : d.58.11.2 |Ferredoxin-like |EF-G C-terminal domain-like |YigZ C-terminal domain-like |Hypothetical protein TTHA1053, C-terminal domain |Thermus thermophilus [TaxId: 274]
d3g00b_ : (PHE105) (GLY150) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d1qfja2 : (PRO104) (GLY138) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |NAD(P)H:flavin oxidoreductase |Escherichia coli [TaxId: 562]
d1ulta_ : (ASP73) (ASN103) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Long chain fatty acid-CoA ligase TT0168 |Thermus thermophilus [TaxId: 274]
d1fuea_ : (ILE81) (THR118) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Helicobacter pylori [TaxId: 210]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.10, c.69, c.94, c.2, d.58, i.1, c.68, c.82, d.157, c.77, c.93, c.23, c.37, c.47, c.89, c.86, d.151, e.23,
c.78, c.25, c.34, c.30, c.58, c.136, c.44, c.143, g.43, d.30