Tableau information
Concept source: d3qjgb_ amino acid (a.a.) range (GLU3)(ALA36)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU3) (GLY11) E1
(SER12) (ILE18) H2
(ILE18) (LYS26) H3
(ASP30) (ALA36) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -141.2° H2
H3 174.5° -43.8° H3
E4 -20.2° -148.1° 158.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1xcba2 : (GLU142) (PHE171) [view usage] : c.2.1.12 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Transcriptional repressor Rex, C-terminal domain |Transcriptional repressor Rex, C-terminal domain |Thermus aquaticus [TaxId: 271]
d4hv4a2 : (GLY225) (GLY251) [view usage] : c.72.2.0 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1h5yb_ : (PRO9) (ASP54) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF |Pyrobaculum aerophilum [TaxId: 13773]
d2x77a_ : (ALA90) (ALA128) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d1e20a_ : (ARG21) (THR53) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3q1tb_ : (GLY25) (GLY67) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
d3q1te_ : (GLY25) (GLY67) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
d1jscb2 : (LYS215) (ASP248) [view usage] : c.36.1.5 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase Pyr module |Acetohydroxyacid synthase catalytic subunit |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3fvla_ : (LEU201) (SER242) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d1mvla_ : (ARG21) (THR53) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4eq9a_ : (LYS38) (LYS83) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d1yrqa_ : (PRO7) (TYR44) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d4m76b_ : (GLU179) (GLY207) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zzfa_ : (SER323) (ARG350) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3dvxa_ : (ILE24) (GLN65) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d3qjgb_ : (GLU3) (ALA36) [view usage] : c.34.1.0 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d2i7cb_ : (ASP152) (GLN190) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1myra_ : (ASN410) (ALA456) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1sxga_ : (LYS178) (ASP220) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Bacillus megaterium [TaxId: 1404]
d4dz1a_ : (GLY28) (GLU74) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Salmonella enterica [TaxId: 28901]
d1mvna_ : (ARG21) (THR53) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1h2as_ : (PRO7) (TYR44) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |Nickel-iron hydrogenase, small subunit |Desulfovibrio vulgaris [TaxId: 881]
d3qk8a_ : (GLY19) (GLY61) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d1arla_ : (GLN200) (SER242) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d3hd5c_ : (ILE48) (ASN89) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bordetella parapertussis [TaxId: 519]
d1bava_ : (GLN200) (SER242) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d1h5ya_ : (HIS2) (ASP54) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF |Pyrobaculum aerophilum [TaxId: 13773]
d4j2ha_ : (GLY139) (TYR191) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d4jrrc_ : (PRO56) (PRO93) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d2ccga_ : (ASP31) (ASP91) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2htec_ : (ASP153) (GLN191) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d3kgqa_ : (LEU201) (SER242) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d4ilea_ : (ALA91) (GLY129) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dvxb_ : (ILE24) (HIS61) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d1jsca2 : (LYS215) (ASP248) [view usage] : c.36.1.5 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase Pyr module |Acetohydroxyacid synthase catalytic subunit |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3n5cb_ : (GLN82) (ASN122) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARF1 [TaxId: 9606]
d3rieb_ : (ASP191) (GLN229) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2jjra_ : (ASP78) (THR104) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d3fmxx_ : (ARG7) (GLU45) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
d1wfsa_ : (GLY86) (ARG130) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |Glia maturation factor gamma, GMF-gamma |Mouse (Mus musculus) [TaxId: 10090]
d2cvea2 : (GLY161) (GLU191) [view usage] : d.58.11.2 |Ferredoxin-like |EF-G C-terminal domain-like |YigZ C-terminal domain-like |Hypothetical protein TTHA1053, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1gs5a_ : (ARG230) (ALA258) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, d.58, c.56, c.66, c.77, c.93, c.14, d.165, c.72, c.37, c.36, c.47, c.62, c.73, d.109, c.34, e.19