Tableau information
Concept source: d3ek6a_ amino acid (a.a.) range (ARG8)(GLY54)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG8) (SER14) E1
(SER14) (GLY20) H2
(ASP27) (ALA44) H3
(VAL48) (GLY54) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 74.0° H2
H3 167.0° 114.0° H3
E4 -15.4° -87.9° 157.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pz3a2 : (PRO66) (ASN128) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Alpha-L-arabinofuranosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d2qi9c_ : (GLY54) (GLN80) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d1n2ta_ : (ARG159) (GLY198) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystine C-S lyase C-des |Synechocystis sp. [TaxId: 1143]
d1muwa_ : (ARG9) (HIS53) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces olivochromogenes [TaxId: 1963]
d1kf6a3 : (GLY251) (LEU316) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Fumarate reductase |Escherichia coli [TaxId: 562]
d1fpxa2 : (ALA249) (ASP288) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Isoflavone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4rhcf_ : (THR4) (SER52) [view usage] : c.23.13.0 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |automated matches |automated matches |Acinetobacter baumannii [TaxId: 400667]
d2dzvb_ : (PRO82) (ASP116) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Trp synthase alpha-subunit |Pyrococcus furiosus [TaxId: 2261]
d1kwga2 : (MET1) (ILE33) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |A4 beta-galactosidase |Thermus thermophilus [TaxId: 274]
d3ek5b_ : (ARG8) (GLY54) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d2gj9b_ : (ARG298) (ARG334) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d4ixna1 : (ASP153) (HIS187) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Hypothetical protein YjiA, N-terminal domain |Escherichia coli [TaxId: 562]
d1nkva_ : (ASP105) (GLN145) [view usage] : c.66.1.21 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Hypothetical Protein YjhP |Hypothetical Protein YjhP |Escherichia coli [TaxId: 562]
d2guya2 : (ASP201) (LEU232) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Fungal alpha-amylases |Aspergillus oryzae, Taka-amylase [TaxId: 5062]
d3ek5a_ : (ARG8) (GLY54) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d2qyoa2 : (ALA254) (ASP293) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |automated matches |Medicago truncatula [TaxId: 3880]
d1ojja_ : (HIS38) (ILE78) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d3ek6a_ : (ARG8) (GLY54) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d1z3ix2 : (GLY285) (GLY319) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d1tf7a2 : (ALA373) (THR415) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Circadian clock protein KaiC |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d1kd0a1 : (HIS326) (THR360) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |beta-Methylaspartase |Clostridium tetanomorphum [TaxId: 1553]
d3uorb_ : (TRP138) (ILE185) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d2hyic1 : (LYS182) (ALA219) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Probable ATP-dependent RNA helicase DDX48 |Human (Homo sapiens) [TaxId: 9606]
d3l4na_ : (PRO184) (GLN224) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4rhcc_ : (THR4) (SER52) [view usage] : c.23.13.0 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |automated matches |automated matches |Acinetobacter baumannii [TaxId: 400667]
d2ihoa2 : (GLY184) (GLY248) [view usage] : d.3.1.18 |Cysteine proteinases |Cysteine proteinases |MOA C-terminal domain-like |Agglutinin MOA |Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]
d1o1ha_ : (ARG9) (HIS53) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d4rhca_ : (THR4) (SER52) [view usage] : c.23.13.1 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |automated matches |Acinetobacter baumannii [TaxId: 400667]
d1fp2a2 : (ALA249) (ASP288) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Isoflavone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4jj9a_ : (PRO2) (PRO52) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d2gyib_ : (ARG9) (HIS53) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces olivochromogenes [TaxId: 1963]
d1wdwe_ : (LEU7) (ILE39) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Trp synthase alpha-subunit |Pyrococcus furiosus [TaxId: 2261]
d1zoya2 : (ILE275) (LEU326) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydogenase |Pig (Sus scrofa) [TaxId: 9823]
d4a7xa_ : (ARG9) (GLY55) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1fbsb_ : (ILE223) (ASN280) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1yr6a1 : (LEU126) (LEU164) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |ATP(GTP)-binding protein PAB0955 |Pyrococcus abyssi [TaxId: 29292]
d4lnca_ : (ASP9) (HIS54) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d3h7ia1 : (GLU13) (ASP71) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |T4 RNase H |Bacteriophage T4 [TaxId: 10665]
d1ybda1 : (ARG11) (GLY58) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Uridylate kinase PyrH |Neisseria meningitidis [TaxId: 487]
d3gu3a_ : (ASP108) (ILE147) [view usage] : c.66.1.49 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |BC2162-like |automated matches |Bacillus cereus [TaxId: 226900]
d2guba_ : (ASP9) (HIS54) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |automated matches |Streptomyces rubiginosus [TaxId: 1929]
d1khta_ : (VAL32) (THR91) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus voltae [TaxId: 2188]
d3ek6b_ : (ILE9) (GLY54) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d1pz2a2 : (PRO66) (ASN128) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Alpha-L-arabinofuranosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d3uora_ : (TRP138) (ILE185) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, b.29, c.66, c.23, c.37, c.47, d.3, c.73, c.120, a.4, d.168, d.80