Tableau information
Concept source: d3vm5a1 amino acid (a.a.) range (THR11)(SER43)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR11) (PHE17) E1
(ARG20) (ARG30) H2
(PHE31) (GLY36) H3
(ALA38) (SER43) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 150.7° H2
H3 158.2° -37.4° H3
E4 -23.2° 169.8° 142.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1mwoa2 : (VAL11) (PRO48) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Pyrococcus woesei [TaxId: 2262]
d1vlad_ : (THR87) (GLU137) [view usage] : d.227.1.2 |OsmC-like |OsmC-like |YhfA-like |Hypothetical protein TM0919 |Thermotoga maritima [TaxId: 2336]
d1tvia_ : (MET1) (SER40) [view usage] : d.92.1.15 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Predicted metal-dependent hydrolase |Hypothetical protein TM1509 |Thermotoga maritima [TaxId: 2336]
d1g5ca_ : (LYS26) (ALA58) [view usage] : c.53.2.1 |Resolvase-like |beta-carbonic anhydrase, cab |beta-carbonic anhydrase, cab |beta-carbonic anhydrase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1qy7a_ : (LYS58) (ARG103) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1ljla_ : (LYS4) (GLU40) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Staphylococcus aureus [TaxId: 1280]
d3eura_ : (LYS64) (ASP95) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d1ekeb_ : (GLU106) (GLU145) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |Class II ribonuclease H (RNase HII) |Methanococcus jannaschii [TaxId: 2190]
d1cvra2 : (ARG11) (VAL42) [view usage] : c.17.1.2 |Caspase-like |Caspase-like |Gingipain R (RgpB), N-terminal domain |Gingipain R (RgpB), N-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d3byqb_ : (SER80) (VAL122) [view usage] : d.79.9.1 |Bacillus chorismate mutase-like |BB2672-like |BB2672-like |Uncharacterized protein BB2672 |Bordetella bronchiseptica [TaxId: 518]
d2ehja_ : (LYS70) (MET101) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1a9xb1 : (GLU1529) (TYR1557) [view usage] : c.8.3.1 |The "swivelling" beta/beta/alpha domain |Carbamoyl phosphate synthetase, small subunit N-terminal domain |Carbamoyl phosphate synthetase, small subunit N-terminal domain |Carbamoyl phosphate synthetase, small subunit N-terminal domain |Escherichia coli [TaxId: 562]
d1k7ya2 : (PRO829) (GLN858) [view usage] : c.23.6.1 |Flavodoxin-like |Cobalamin (vitamin B12)-binding domain |Cobalamin (vitamin B12)-binding domain |Methionine synthase, C-terminal domain |Escherichia coli [TaxId: 562]
d2ofpa2 : (GLY135) (ASN167) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Ketopantoate reductase PanE |Escherichia coli [TaxId: 562]
d2zkia_ : (LYS108) (ILE144) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d3ouua2 : (GLY168) (LYS202) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d1d0na1 : (ILE80) (VAL122) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Gelsolin |Horse (Equus caballus) [TaxId: 9796]
d1s1ii_ : (ILE135) (SER168) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3aa9c_ : (GLN63) (PRO95) [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
d1otfa_ : (PRO2) (GLU45) [view usage] : d.80.1.1 |Tautomerase/MIF |Tautomerase/MIF |4-oxalocrotonate tautomerase-like |4-oxalocrotonate tautomerase |Pseudomonas sp., DmpI [TaxId: 306]
d1d1qb_ : (LYS6) (SER49) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vlac_ : (THR87) (ASN138) [view usage] : d.227.1.2 |OsmC-like |OsmC-like |YhfA-like |Hypothetical protein TM0919 |Thermotoga maritima [TaxId: 2336]
d2op8a_ : (PRO1) (ARG46) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4k6lf_ : (MET30) (GLU66) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Salmonella enterica [TaxId: 90370]
d1pa4a_ : (LEU45) (VAL92) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Mycoplasma pneumoniae [TaxId: 2104]
d2w37a1 : (LYS52) (GLY84) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Lactobacillus hilgardii [TaxId: 1588]
d2f8qa_ : (GLY252) (GLY312) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus sp. [TaxId: 65673]
d4rpnd_ : (ARG97) (HIS135) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sphingobium chlorophenolicum [TaxId: 46429]
d2dgua_ : (LYS338) (ARG366) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2zska2 : (LYS117) (PRO146) [view usage] : c.78.2.0 |ATC-like |Aspartate/glutamate racemase |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d2fywc_ : (SER176) (THR202) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein SP1609 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2pn2a1 : (SER88) (HIS132) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Uncharacterized protein Psyc0566 |Psychrobacter arcticus 273-4 [TaxId: 259536]
d2x4ka_ : (SER0) (GLU46) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4d9eb_ : (SER187) (THR219) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d1u5wh_ : (HIS5) (GLY43) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Escherichia coli [TaxId: 562]
d1cyga4 : (VAL13) (SER74) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d1a47a4 : (ASP15) (SER77) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]
d2mgza_ : (ARG100) (ASP128) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3oexb_ : (LYS17) (VAL49) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Salmonella typhimurium [TaxId: 90371]
d1v3ja4 : (VAL16) (SER77) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus sp. 1011, alkaliphilic [TaxId: 1410]
d1w55a2 : (ILE301) (THR342) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |IspD/ispF bifunctional enzyme, MECDP synthase domain |Campylobacter jejuni [TaxId: 197]
d4a7xa_ : (LYS211) (LYS240) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1xcja_ : (ASP129) (ASN169) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2iypc1 : (SER139) (ALA176) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Lactococcus lactis [TaxId: 1358]
d1aq0a_ : (ARG86) (SER128) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Plant beta-glucanases |Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]
d1jn1a_ : (GLY93) (THR134) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Haemophilus influenzae [TaxId: 727]
d1amya2 : (VAL2) (PRO40) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Plant alpha-amylase |Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
d3n5id_ : (LYS248) (SER296) [view usage] : d.154.1.0 |DmpA/ArgJ-like |DmpA/ArgJ-like |automated matches |automated matches |Sphingosinicella xenopeptidilytica [TaxId: 364098]
d1ua7a2 : (GLY9) (SER40) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus subtilis [TaxId: 1423]
d4rnsa_ : (ASN96) (VAL131) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sphingobium chlorophenolicum [TaxId: 46429]
d1u9da_ : (MSE1) (LEU40) [view usage] : d.80.1.5 |Tautomerase/MIF |Tautomerase/MIF |VC0714-like |Hypothetical protein VC0714 |Vibrio cholerae [TaxId: 666]
d3bmva4 : (VAL16) (PRO77) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]
d3fdsa2 : (ASP294) (GLY345) [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DinB homolog (DBH) |Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
d1v3ka4 : (VAL16) (SER77) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus sp. 1011, alkaliphilic [TaxId: 1410]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, d.58, i.1, c.79, c.66, d.92, c.135, c.23, c.47, c.55, d.151, c.78, c.53, c.73, c.8, c.51, c.61, d.79,
d.142, d.109, d.227, c.44, d.240, d.52, c.17, d.80, d.154