Tableau information
Concept source: d2cmga_ amino acid (a.a.) range (THR95)(LYS130)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR95) (GLN101) E1
(GLU104) (SER109) H2
(PHE117) (ASN123) H3
(PHE126) (LYS130) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 113.5° H2
H3 -106.0° -138.5° H3
E4 -22.4° 134.2° -87.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d6r1ra2 : (THR463) (VAL517) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Escherichia coli [TaxId: 562]
d2nxph_ : (VAL306) (ASP343) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d3aiaa_ : (PRO63) (THR109) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d2nxpf_ : (VAL306) (ASP343) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d1c0aa2 : (PRO289) (PRO324) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Prokaryotic AspRS, insert domain |Escherichia coli [TaxId: 562]
d1vpka1 : (MET1) (LYS38) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Thermotoga maritima [TaxId: 2336]
d4o0ma1 : (PRO71) (ALA109) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1axce1 : (MET1) (SER31) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d2nxpe_ : (LYS304) (ASP343) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d2nxpb_ : (PHE305) (PHE342) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d1cjka_ : (TYR540) (LEU565) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Adenylyl cyclase VC1, domain C1a |Dog (Canis familiaris) [TaxId: 9615]
d2nxpa1 : (LYS304) (ASP343) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d2xbfa_ : (HIS791) (GLN854) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ai9x_ : (PRO63) (THR109) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3ajrb_ : (LEU205) (ALA238) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
d1dqna_ : (CYS149) (TYR170) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Guanine PRTase |Giardia intestinalis [TaxId: 5741]
d1m1ga3 : (LYS12) (ALA50) [view usage] : d.58.42.1 |Ferredoxin-like |N-utilization substance G protein NusG, N-terminal domain |N-utilization substance G protein NusG, N-terminal domain |N-utilization substance G protein NusG, N-terminal domain |Aquifex aeolicus [TaxId: 63363]
d2dqnb2 : (PRO147) (PRO199) [view usage] : d.128.1.5 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |GatB/GatE catalytic domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d7r1ra2 : (THR463) (VAL517) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Escherichia coli [TaxId: 562]
d2xbba_ : (HIS791) (GLN854) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d5r1ra2 : (THR463) (VAL517) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Escherichia coli [TaxId: 562]
d3a1nb_ : (LEU205) (ALA238) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d4kunb_ : (LYS5) (ASP43) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Legionella pneumophila [TaxId: 297246]
d2nxpc_ : (LYS304) (ASP343) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d3a4vb_ : (LEU205) (ALA238) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, d.58, c.66, c.37, c.7, c.47, c.116, c.61, d.131, d.128, d.74, d.148, d.379