Protein Concepts Dictionary

Tableau information

Concept source:  d1vjwa_  amino acid (a.a.) range (MET1)(GLU59)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: EHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET1)    (ASP6) E1
	   (GLY14)   (LEU19) H2
	   (CYS43)   (SER50) H3
	   (ALA55)   (GLU59) E4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                          
H2     -159.9°   H2                   
H3       27.6°  150.3°   H3            
E4      155.8°  -43.9° -144.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1iqza_ :     (PRO1)   (ASP70)   [view usage] : d.58.1.4 |Ferredoxin-like |4Fe-4S ferredoxins |Single 4Fe-4S cluster ferredoxin |Ferredoxin |Bacillus thermoproteolyticus [TaxId: 1427]
 d2z8qa_ :     (ALA1)   (ALA66)   [view usage] : d.58.1.4 |Ferredoxin-like |4Fe-4S ferredoxins |Single 4Fe-4S cluster ferredoxin |automated matches |Pyrococcus furiosus [TaxId: 186497]
 d4id8a_ :     (THR6)   (ASP69)   [view usage] : d.58.1.0 |Ferredoxin-like |4Fe-4S ferredoxins |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d4ov1a_ :     (MET4)   (ASP69)   [view usage] : d.58.1.0 |Ferredoxin-like |4Fe-4S ferredoxins |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d1jnrb_ :     (PRO2)   (GLY66)   [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Adenylylsulfate reductase B subunit |Archaeoglobus fulgidus [TaxId: 2234]
 d1vjwa_ :     (MET1)   (GLU59)   [view usage] : d.58.1.4 |Ferredoxin-like |4Fe-4S ferredoxins |Single 4Fe-4S cluster ferredoxin |Ferredoxin A |Thermotoga maritima [TaxId: 2336]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.58