Tableau information
Concept source: d1hcud_ amino acid (a.a.) range (SER171)(SER227)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER171) (VAL175) E1
(VAL175) (LEU191) H2
(PRO195) (ASN210) H3
(THR224) (SER227) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -77.4° H2
H3 -82.8° -149.9° H3
E4 164.2° 89.0° 106.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1r8db_ : (MET1) (SER42) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Multidrug transporter activator MtaN |Bacillus subtilis [TaxId: 1423]
d1hj6a_ : (GLY162) (SER202) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |Isocitrate dehydrogenase, ICDH |Escherichia coli [TaxId: 562]
d1gyta2 : (ILE219) (GLY256) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |Leucine aminopeptidase, C-terminal domain |Escherichia coli, PepA [TaxId: 562]
d3huma1 : (ASN173) (THR204) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Pencillin binding protein 4 (PbpD), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d2ykma1 : (ASP250) (PRO294) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d1bqna2 : (ASP250) (PRO294) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1he3a_ : (TYR163) (GLN204) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Biliverdin IX beta reductase |Human (Homo sapiens) [TaxId: 9606]
d2aqxb_ : (LYS757) (LYS789) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1hcua_ : (SER171) (SER227) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1saza1 : (GLY84) (VAL126) [view usage] : c.55.1.2 |Ribonuclease H-like motif |Actin-like ATPase domain |Acetokinase-like |butyrate kinase 2 |Thermotoga maritima [TaxId: 2336]
d2nvpa1 : (GLN354) (HIS396) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d3wkga_ : (THR119) (ALA171) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Rhodothermus marinus [TaxId: 29549]
d3wkga_ : (PRO192) (PHE243) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Rhodothermus marinus [TaxId: 29549]
d3wkfa_ : (PRO192) (PHE243) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Rhodothermus marinus [TaxId: 29549]
d1bqma2 : (ASP250) (GLU297) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1exia1 : (GLU3) (THR46) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Transcription activator BmrR |Bacillus subtilis [TaxId: 1423]
d2bisb_ : (LYS155) (PRO179) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d1kxha2 : (ASN88) (ASP146) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Pseudoalteromonas haloplanktis [TaxId: 228]
d1hcuc_ : (SER171) (SER229) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1fhfa_ : (GLY172) (ASN219) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Soybean (Glycine max) [TaxId: 3847]
d1dceb_ : (GLY139) (CYS183) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Rab geranylgeranyltransferase, beta subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1e6va2 : (TYR165) (MET213) [view usage] : d.58.31.2 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase alpha and beta chain N-terminal domain |Alpha chain |Methanopyrus kandleri [TaxId: 2320]
d1wj4a_ : (GLU84) (VAL116) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |Hypothetical protein KIAA0794 |Human (Homo sapiens) [TaxId: 9606]
d1khud_ : (ILE382) (SER415) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
d2p0va1 : (ASP400) (ASN444) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein BT3781 |Bacteroides thetaiotaomicron [TaxId: 818]
d1wzza1 : (LYS109) (GLY163) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Probable endoglucanase CmcAX |Acetobacter xylinus [TaxId: 28448]
d4a5ga_ : (GLY174) (ASN221) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Radish (Raphanus sativus) [TaxId: 3726]
d1qzqa1 : (GLN294) (GLU349) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d3froa_ : (LYS155) (PRO179) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d1vfma3 : (ASN243) (GLU299) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Thermoactinomyces vulgaris [TaxId: 2026]
d1hcub_ : (SER171) (SER227) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1nc5a_ : (TYR138) (ALA194) [view usage] : a.102.1.6 |alpha/alpha toroid |Six-hairpin glycosidases |Hypothetical protein YteR |Hypothetical protein YteR |Bacillus subtilis [TaxId: 1423]
d1pa2a_ : (GLY172) (ASP221) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Thale cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]
d1bgpa_ : (GLY182) (VAL223) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]
d3dssb_ : (GLY139) (CYS183) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Rab geranylgeranyltransferase, beta subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3trra_ : (ALA120) (THR161) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1hcud_ : (SER171) (SER227) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1l1ya_ : (THR515) (ALA577) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium thermocellum [TaxId: 1515]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, c.2, d.58, c.56, a.102, c.77, c.14, a.93, c.55, c.87, d.143, b.26, d.15, d.136, a.6