Tableau information
Concept source: d1lk0a_ amino acid (a.a.) range (LYS4)(ASP56)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS4) (CYS10) E1
(CYS15) (ILE27) H2
(VAL34) (GLU40) E3
(PRO46) (ASP56) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 159.3° H2
E3 -32.8° 167.8° E3
H4 131.9° -28.4° 163.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1e0va_ : (THR235) (GLY302) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
d2bnja1 : (THR236) (GLN302) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Thermoascus aurantiacus [TaxId: 5087]
d2yvwa_ : (HIS163) (MET209) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d1ta3b_ : (THR235) (SER301) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]
d1tuxa_ : (THR236) (LEU301) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Thermoascus aurantiacus [TaxId: 5087]
d4pfta_ : (GLU221) (GLY261) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1qo0b_ : (ASP199) (LYS241) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d4etmb_ : (ILE2) (GLY63) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1phra_ : (THR5) (GLY67) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Cow (Bos taurus) [TaxId: 9913]
d1y1la_ : (LYS1) (GLY52) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Archaeoglobus fulgidus [TaxId: 2234]
d1erza_ : (ILE5) (SER66) [view usage] : d.160.1.2 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Carbamilase |N-carbamoyl-D-aminoacid amidohydrolase |Agrobacterium sp. [TaxId: 361]
d1yova_ : (ALA31) (ASN72) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d3v20b_ : (ALA193) (GLN253) [view usage] : c.52.1.7 |Restriction endonuclease-like |Restriction endonuclease-like |Cfr10I/Bse634I |Restriction endonuclease Bse634I |Bacillus stearothermophilus [TaxId: 1422]
d3rofa_ : (GLY0) (ASN62) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1qo5e_ : (VAL183) (THR252) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Human (Homo sapiens), liver isozyme [TaxId: 9606]
d1on3a2 : (VAL329) (GLY384) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) |Propionibacterium freudenreichii [TaxId: 1744]
d2eb0b_ : (MET1) (GLY47) [view usage] : c.107.1.0 |DHH phosphoesterases |DHH phosphoesterases |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2enxa_ : (SER2) (GLY55) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |automated matches |Streptococcus agalactiae [TaxId: 205921]
d2b8na_ : (ASN268) (LEU337) [view usage] : c.118.1.1 |GckA/TtuD-like |GckA/TtuD-like |GckA/TtuD-like |Putative glycerate kinase (hypothetical protein TM1585) |Thermotoga maritima [TaxId: 2336]
d3cufa_ : (LEU234) (GLU310) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Cellulomonas fimi [TaxId: 1708]
d1e0xa_ : (THR235) (GLY302) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
d3v21f_ : (ALA193) (GLN253) [view usage] : c.52.1.7 |Restriction endonuclease-like |Restriction endonuclease-like |Cfr10I/Bse634I |Restriction endonuclease Bse634I |Bacillus stearothermophilus [TaxId: 1422]
d2kb0a_ : (ASP76) (LYS133) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
d3v1za_ : (ALA193) (GLN253) [view usage] : c.52.1.7 |Restriction endonuclease-like |Restriction endonuclease-like |Cfr10I/Bse634I |Restriction endonuclease Bse634I |Bacillus stearothermophilus [TaxId: 1422]
d3s4tc_ : (PHE95) (TRP148) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |automated matches |Polaromonas sp. [TaxId: 296591]
d1wpma_ : (GLU2) (LYS54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d1k23a_ : (GLU2) (LYS54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d1wpmb_ : (GLU2) (LYS54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d1x3la_ : (LYS285) (SER356) [view usage] : c.118.1.0 |GckA/TtuD-like |GckA/TtuD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1k23c_ : (GLU2) (LYS54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d1qo0a_ : (ASP199) (MET242) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d1wpna_ : (GLU2) (LYS54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d1k20a_ : (SER2) (GLY55) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Streptococcus gordonii [TaxId: 1302]
d1u2pa_ : (LEU5) (GLY66) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1xrsa_ : (TYR230) (ASP269) [view usage] : c.1.19.4 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |D-lysine 5,6-aminomutase alpha subunit, KamD |D-lysine 5,6-aminomutase alpha subunit, KamD |Clostridium sticklandii [TaxId: 1511]
d2gg4a_ : (GLY395) (GLY444) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1zq9a1 : (ASP123) (LEU163) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |Probable dimethyladenosine transferase |Human (Homo sapiens) [TaxId: 9606]
d1jf8a_ : (LYS4) (ASP56) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Staphylococcus aureus [TaxId: 1280]
d4iwma_ : (LYS172) (LEU212) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2c79a_ : (LYS480) (ALA523) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Clostridium thermocellum [TaxId: 1515]
d1jqjd2 : (GLN78) (ALA124) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d3d02a_ : (LYS215) (ALA253) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 272620]
d3gzna_ : (ALA38) (ASN79) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d1knvb_ : (ALA193) (GLN253) [view usage] : c.52.1.7 |Restriction endonuclease-like |Restriction endonuclease-like |Cfr10I/Bse634I |Restriction endonuclease Bse634I |Bacillus stearothermophilus [TaxId: 1422]
d1ipaa1 : (LEU117) (THR163) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |RrmA (RrmH), C-terminal domain |Thermus thermophilus [TaxId: 274]
d3i6ea2 : (ASP221) (GLY265) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 89184]
d1akoa_ : (MET1) (GLY51) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA-repair enzyme exonuclease III |Escherichia coli [TaxId: 562]
d3nydb_ : (PRO231) (GLN302) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Thermoascus aurantiacus [TaxId: 5087]
d1wppa_ : (SER2) (PHE54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Streptococcus gordonii [TaxId: 1302]
d2iw4a_ : (GLU2) (LYS54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d2jc4a_ : (MET1) (GLY51) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 487]
d3h0ua_ : (THR21) (GLY90) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Streptomyces avermitilis [TaxId: 33903]
d2iw4b_ : (GLU2) (LYS54) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d1nj8a2 : (ILE394) (GLU434) [view usage] : d.68.5.1 |IF3-like |C-terminal domain of ProRS |C-terminal domain of ProRS |C-terminal domain of ProRS |Methanocaldococcus jannaschii [TaxId: 2190]
d1jqjc2 : (GLN78) (ALA124) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d3e5ya_ : (MET1) (GLY48) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 425067]
d1i74a_ : (SER1) (GLY53) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Streptococcus mutans [TaxId: 1309]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, d.68, c.6, c.66, c.93, c.14, c.135, c.37, d.151, c.107, d.160, c.116, c.111, c.52, c.44, c.118