Tableau information
Concept source: d1yaga1 amino acid (a.a.) range (PRO102)(GLY146)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO102) (ALA108) E1
(PRO112) (ASN128) H2
(PRO130) (ILE136) E3
(ILE136) (GLY146) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 156.8° H2
E3 -21.9° 155.0° E3
H4 -108.1° -78.7° 86.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1m0wb1 : (ASP1217) (ASP1259) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1whba_ : (TYR89) (CYS141) [view usage] : c.46.1.4 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Human (Homo sapiens) [TaxId: 9606]
d1yqea1 : (GLU237) (LYS273) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein AF0625 |Archaeoglobus fulgidus [TaxId: 2234]
d1clea_ : (PRO115) (LEU164) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d4lafa_ : (THR3) (GLY53) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Pseudomonas sp. [TaxId: 165468]
d2o14a2 : (ARG163) (ASN217) [view usage] : c.23.10.8 |Flavodoxin-like |SGNH hydrolase |YxiM C-terminal domain-like |Hypothetical protein YxiM |Bacillus subtilis [TaxId: 1423]
d3qmlb2 : (ASP378) (GLY423) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2eena_ : (PHE133) (ARG178) [view usage] : d.63.1.0 |CYTH-like phosphatases |CYTH-like phosphatases |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1p8za2 : (ASN296) (LEU349) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1sz2a2 : (LYS57) (LEU111) [view usage] : c.55.1.7 |Ribonuclease H-like motif |Actin-like ATPase domain |Glucokinase |Glucokinase Glk |Escherichia coli [TaxId: 562]
d1fuia2 : (GLY174) (LYS220) [view usage] : c.85.1.1 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |L-fucose isomerase, N-terminal and second domains |L-fucose isomerase, N-terminal and second domains |Escherichia coli [TaxId: 562]
d1ggpa_ : (SER82) (GLY121) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Lectin 1 A-chain |Mongolian snake-gourd (Trichosanthes kirilowii) [TaxId: 3677]
d1og6a_ : (ARG16) (TYR55) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Hypothetical oxidoreductase YdhF |Escherichia coli [TaxId: 562]
d4jdwa_ : (ARG263) (ASN309) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d1zbsa2 : (ARG61) (GLY107) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Hypothetical protein PG1100 |Porphyromonas gingivalis [TaxId: 837]
d2hgsa1 : (ASN203) (GLU244) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1zxob1 : (ASN59) (GLY105) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Hypothetical protein BT3618 |Bacteroides thetaiotaomicron [TaxId: 818]
d2g6ta1 : (PRO111) (ASN152) [view usage] : c.147.1.1 |CAC2185-like |CAC2185-like |CAC2185-like |Hypothetical protein CAC2185 |Clostridium acetobutylicum [TaxId: 1488]
d1c7na_ : (GLN351) (LYS394) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystalysin |Treponema denticola [TaxId: 158]
d1b73a2 : (SER219) (PHE252) [view usage] : c.78.2.1 |ATC-like |Aspartate/glutamate racemase |Aspartate/glutamate racemase |Glutamate racemase |Aquifex pyrophilus [TaxId: 2714]
d1yt8a3 : (ARG432) (ALA471) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Thiosulfate sulfurtransferase PA2603 |Pseudomonas aeruginosa [TaxId: 287]
d1u14a_ : (HIS2) (LEU65) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Salmonella typhimurium [TaxId: 90371]
d4lafb_ : (THR3) (GLY53) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Pseudomonas sp. [TaxId: 165468]
d3bp8a2 : (SER148) (LEU205) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Mlc protein |Escherichia coli [TaxId: 562]
d1m0ta1 : (THR214) (ASP259) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3zwqa_ : (PRO77) (LYS122) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pyrobaculum calidifontis [TaxId: 410359]
d2whja_ : (ASN49) (ARG93) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus agaradhaerens [TaxId: 76935]
d1djqa1 : (ALA218) (GLY269) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Trimethylamine dehydrogenase, N-terminal domain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d2zc0a_ : (GLY359) (LYS404) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermococcus litoralis [TaxId: 2265]
d1wwja_ : (TYR8) (PRO51) [view usage] : c.47.1.15 |Thioredoxin fold |Thioredoxin-like |KaiB-like |automated matches |Synechocystis sp. [TaxId: 1143]
d1iq8a1 : (ALA35) (ASP70) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Archaeosine tRNA-guanine transglycosylase, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d1c7ga_ : (ASN120) (ALA148) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |Tyrosine phenol-lyase |Erwinia herbicola [TaxId: 549]
d1m0wa1 : (SER216) (ASP259) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2g6tb_ : (PRO111) (ASN152) [view usage] : c.147.1.1 |CAC2185-like |CAC2185-like |CAC2185-like |Hypothetical protein CAC2185 |Clostridium acetobutylicum [TaxId: 1488]
d3v8ba_ : (HIS179) (ARG260) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2c7ba_ : (PRO74) (LYS119) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Uncultured archaeon [TaxId: 115547]
d4db3a1 : (LYS59) (ASP116) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Vibrio vulnificus [TaxId: 672]
d1wp0b_ : (TRP159) (THR209) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p5ja_ : (VAL9) (ARG43) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.2, c.79, c.56, d.165, c.23, c.47, c.55, c.85, d.126, c.78, c.51, c.30, d.63, c.46, c.147