Tableau information
Concept source: d2cfia2 amino acid (a.a.) range (VAL27)(ALA61)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL27) (VAL32) E1
(PRO41) (GLY50) H2
(PRO52) (TYR56) E3
(TYR56) (ALA61) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -148.0° H2
E3 -25.2° -154.9° E3
H4 -87.8° 99.5° 64.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2w79a_ : (MET1) (ASN58) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |automated matches |Thermotoga maritima [TaxId: 2336]
d4bofa_ : (VAL363) (ARG394) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1sd8a_ : (ASN3) (PRO38) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |automated matches |Escherichia coli [TaxId: 562]
d1r7ha_ : (MET1) (GLY47) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Glutaredoxin-like NRDH-redoxin |Corynebacterium ammoniagenes [TaxId: 1697]
d3sc6d_ : (GLU3) (ILE42) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d1qhma_ : (ASN1370) (ASN1410) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1zmaa1 : (ALA29) (LEU70) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Bacterocin transport accessory protein Bta |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2exra2 : (PRO381) (ASP423) [view usage] : d.58.32.0 |Ferredoxin-like |FAD-linked oxidases, C-terminal domain |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1s3da_ : (ASN3) (PRO38) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |Arsenate reductase ArsC |Escherichia coli [TaxId: 562]
d4nb4d_ : (GLU45) (GLY86) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Type II pantothenate kinase, CoaW |Staphylococcus aureus [TaxId: 1280]
d1wf6a_ : (THR79) (GLY116) [view usage] : c.15.1.5 |BRCT domain |BRCT domain |DNA topoisomerase II binding protein 1, TopBP1 |DNA topoisomerase II binding protein 1, TopBP1 |Human (Homo sapiens) [TaxId: 9606]
d2m46a_ : (MET1) (THR36) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d3djcc2 : (ILE217) (ASN254) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d1pkla1 : (ALA105) (VAL135) [view usage] : b.58.1.1 |PK beta-barrel domain-like |PK beta-barrel domain-like |Pyruvate kinase beta-barrel domain |Pyruvate kinase (PK) |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d1q77a_ : (LYS2) (THR50) [view usage] : c.26.2.4 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |Universal stress protein-like |Hypothetical protein Aq_178 |Aquifex aeolicus [TaxId: 63363]
d3gfka_ : (MET1) (PRO36) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2koka_ : (VAL7) (GLY41) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Brucella abortus [TaxId: 235]
d1s3ca_ : (ASN3) (PRO38) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |automated matches |Escherichia coli [TaxId: 562]
d1h16a_ : (ASN370) (PHE409) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d2a6aa1 : (VAL58) (LYS99) [view usage] : c.55.1.9 |Ribonuclease H-like motif |Actin-like ATPase domain |YeaZ-like |Hypothetical protein TM0874 |Thermotoga maritima [TaxId: 2336]
d1l7ba_ : (SER46) (THR82) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |NAD+-dependent DNA ligase, domain 4 |Thermus thermophilus [TaxId: 274]
d4bofb_ : (VAL363) (ARG394) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1b26a1 : (LYS309) (ALA342) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Thermotoga maritima [TaxId: 2336]
d3sc6c_ : (GLU3) (ILE42) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d2yt8a_ : (GLY56) (GLY93) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fz4a_ : (MSE1) (PRO36) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1r8wa_ : (LEU376) (GLY419) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Glycerol dehydratase DhaB1 |Clostridium butyricum [TaxId: 1492]
d4dejd1 : (VAL10) (LEU53) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Idiomarina loihiensis [TaxId: 283942]
d4iwma_ : (ASP65) (ILE108) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2akza1 : (GLY390) (ASN429) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Human (Homo sapiens), gamma isoform [TaxId: 9606]
d2az4a1 : (GLY188) (PRO223) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Hypothetical protein EF2904 |Enterococcus faecalis [TaxId: 1351]
d3djca2 : (ILE217) (ASN254) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d1cm5a_ : (ASN370) (ASN410) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d4deje1 : (VAL10) (LEU53) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Idiomarina loihiensis [TaxId: 283942]
d3sc6a_ : (GLU3) (ASN41) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d1ovad_ : (SER116) (ALA150) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Ovalbumin |Chicken (Gallus gallus) [TaxId: 9031]
d1rw1a_ : (THR2) (HIS50) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |Hypothetical protein PA3664 (YffB) |Pseudomonas aeruginosa [TaxId: 287]
d1vjca_ : (VAL159) (LEU193) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, d.58, c.26, d.157, c.135, c.7, c.47, c.55, c.86, d.126, e.1, c.65, c.15, b.36, b.58