Tableau information
Concept source: d3lg4a_ amino acid (a.a.) range (THR1)(ILE50)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR1) (ALA7) E1
(PRO25) (SER35) H2
(HIS38) (MET42) E3
(ARG44) (ILE50) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -167.3° H2
E3 -58.0° 121.0° E3
H4 55.6° -116.2° 104.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3cc2c1 : (GLY209) (ARG246) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Haloarcula marismortui [TaxId: 2238]
d1nrza_ : (THR5) (ASP41) [view usage] : c.38.1.1 |PTS IIb component |PTS IIb component |PTS IIb component |Sorbose permease subunit IIb , EIIb-sor |Klebsiella pneumoniae [TaxId: 573]
d2zkrc1 : (GLY225) (LYS258) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d2hxva1 : (PHE149) (LYS199) [view usage] : c.71.1.2 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |RibD C-terminal domain-like |Riboflavin biosynthesis protein RibD |Thermotoga maritima [TaxId: 2336]
d4gh8a_ : (MET1) (SER50) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d3sc6d_ : (THR212) (GLY243) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d4ddda_ : (ASP195) (PRO235) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d1lj8a4 : (SER103) (CYS137) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Mannitol 2-dehydrogenase |Pseudomonas fluorescens [TaxId: 294]
d2azna1 : (TYR10) (LYS60) [view usage] : c.71.1.2 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |RibD C-terminal domain-like |HTP reductase |Methanococcus jannaschii [TaxId: 2190]
d4g8zx_ : (SER6) (ILE65) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |automated matches |Pneumocystis jirovecii [TaxId: 42068]
d3h07a_ : (GLU38) (ASP79) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Yersinia pestis [TaxId: 214092]
d3zpca2 : (TYR152) (ASP205) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1j33a_ : (GLY112) (LEU179) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Thermus thermophilus [TaxId: 274]
d3ls6a_ : (GLU40) (ASP79) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Salmonella typhimurium [TaxId: 90371]
d2j01f1 : (TRP172) (ARG205) [view usage] : c.22.1.1 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Thermus thermophilus [TaxId: 274]
d3lqua_ : (GLU40) (ASP79) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Salmonella typhimurium [TaxId: 90371]
d1omoa_ : (GLY210) (HIS246) [view usage] : c.2.1.13 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Ornithine cyclodeaminase-like |Archaeal alanine dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d1pvwa_ : (GLU28) (LEU66) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Methanocaldococcus jannaschii [TaxId: 2190]
d1g4wr2 : (ALA344) (ALA383) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |SptP tyrosine phosphatase, catalytic domain |Salmonella typhimurium [TaxId: 90371]
d2w9ta_ : (THR1) (ILE50) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4h98a_ : (VAL6) (SER61) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 284593]
d4nbsa1 : (ASN11) (ARG43) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d2b3za1 : (TYR147) (ALA198) [view usage] : c.71.1.2 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |RibD C-terminal domain-like |Riboflavin biosynthesis protein RibD |Bacillus subtilis [TaxId: 1423]
d2g6vb2 : (TYR148) (ALA199) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3jw3a_ : (ARG2) (GLY52) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d4v19f_ : (THR239) (ASN277) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d3sc6c_ : (THR212) (GLY243) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d1bmv21 : (VAL3013) (GLU3053) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d3ls6b_ : (GLU40) (ASP79) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Salmonella typhimurium [TaxId: 90371]
d1pvya_ : (GLU28) (LEU66) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Methanocaldococcus jannaschii [TaxId: 2190]
d1jj2c_ : (GLY209) (ARG246) [view usage] : c.22.1.1 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Haloarcula marismortui [TaxId: 2238]
d1yptb_ : (ARG255) (ASN293) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
d3bhma_ : (ALA90) (CYS149) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Carbonyl reductase/20beta-hydroxysteroid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1pvyb_ : (GLU28) (LEU66) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Methanocaldococcus jannaschii [TaxId: 2190]
d4g3ma2 : (TYR147) (ALA198) [view usage] : c.71.1.2 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |RibD C-terminal domain-like |Riboflavin biosynthesis protein RibD |Bacillus subtilis [TaxId: 1423]
d2kgka_ : (MET1) (ILE51) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1cd2a_ : (SER6) (SER64) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
d3tsva_ : (ASN472) (ILE510) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1byra_ : (SER4) (PRO40) [view usage] : d.136.1.1 |Phospholipase D/nuclease |Phospholipase D/nuclease |Nuclease |Nuclease Nuc |Salmonella typhimurium [TaxId: 90371]
d2c29d_ : (ALA85) (ASN133) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Grape (Vitis vinifera) [TaxId: 29760]
d4im7a1 : (LYS97) (PHE131) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 199310]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, c.2, i.1, c.45, c.39, c.37, b.121, c.71, c.38, d.136, b.36, c.22, d.115