Tableau information
Concept source: d2y6pb_ amino acid (a.a.) range (ARG2)(VAL56)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG2) (LEU11) E1
(PRO28) (THR40) H2
(ARG43) (THR48) E3
(SER50) (VAL56) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 176.7° H2
E3 -20.4° 162.3° E3
H4 130.7° -46.8° 150.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4gria1 : (SER3) (GLY66) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Borrelia burgdorferi [TaxId: 224326]
d2nv2c_ : (VAL123) (ALA176) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2ba0f1 : (ILE74) (ALA151) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Archaeoglobus fulgidus [TaxId: 2234]
d1s3la_ : (MET1) (GLU47) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Putative phosphodiesterase MJ0936 |Methanococcus jannaschii [TaxId: 2190]
d4ac9d4 : (LEU85) (GLN141) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor SelB, N-terminal domain |Methanococcus maripaludis [TaxId: 39152]
d1bqga1 : (ASP314) (ALA364) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |D-glucarate dehydratase |Pseudomonas putida [TaxId: 303]
d1e3ha3 : (TYR400) (GLY478) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 |Streptomyces antibioticus [TaxId: 1890]
d4mu3a1 : (VAL35) (LEU91) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3iara_ : (ALA179) (LYS232) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Human (Homo sapiens) [TaxId: 9606]
d2c38v1 : (VAL76) (ALA153) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
d1pyfa_ : (PRO15) (ASN75) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Putative oxidoreductase IolS |Bacillus subtilis [TaxId: 1423]
d3mbda_ : (THR135) (ILE200) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
d3ea1a_ : (ASN76) (VAL138) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |automated matches |Bacillus thuringiensis [TaxId: 1428]
d1wtea_ : (GLY118) (GLY179) [view usage] : c.52.1.29 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoO109IR |Restriction endonuclease EcoO109IR |Escherichia coli [TaxId: 562]
d3c3ea_ : (MSE1) (ASP56) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d1h0xa_ : (ASN10) (GLU54) [view usage] : d.68.6.1 |IF3-like |AlbA-like |DNA-binding protein AlbA |DNA-binding protein AlbA |Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]
d1bxsa_ : (SER273) (LYS328) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Sheep (Ovis aries) [TaxId: 9940]
d1g59a2 : (MET1) (GLY64) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutamyl-tRNA synthetase (GluRS) |Thermus thermophilus [TaxId: 274]
d1ohca1 : (ASN70) (GLY145) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Proline directed phosphatase CDC14b2 |Human (Homo sapiens) [TaxId: 9606]
d2o5ra1 : (MSE1) (GLY64) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d2j24a_ : (PRO4) (LEU48) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4psxa_ : (ASP210) (GLY277) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3u6ya_ : (PRO7) (ARG55) [view usage] : d.68.6.0 |IF3-like |AlbA-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1nxza2 : (HIS77) (GLN141) [view usage] : c.116.1.5 |alpha/beta knot |alpha/beta knot |YggJ C-terminal domain-like |Hypothetical protein HI0303 |Haemophilus influenzae [TaxId: 727]
d1n7ka_ : (SER27) (LYS63) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Deoxyribose-phosphate aldolase DeoC |Aeropyrum pernix [TaxId: 56636]
d4gqua1 : (GLN35) (GLY92) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1krma_ : (ALA176) (LYS229) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Cow (Bos taurus) [TaxId: 9913]
d2cfoa1 : (VAL3) (GLY65) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d1aw1b_ : (PRO4) (VAL47) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Vibrio marinus [TaxId: 90736]
d1wara_ : (ALA4) (SER74) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b9bb_ : (ILE501) (SER556) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Thermotoga maritima [TaxId: 2336]
d1bkha1 : (ASP134) (LEU189) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Muconate-lactonizing enzyme |Pseudomonas putida [TaxId: 303]
d3fluc_ : (VAL158) (GLY198) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Neisseria meningitidis [TaxId: 491]
d1t2na_ : (LEU124) (LEU159) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase A |Bacillus subtilis [TaxId: 1423]
d2xdra_ : (LYS256) (ILE313) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4wj9a_ : (LYS273) (LYS328) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2h9ua_ : (ALA6) (PHE58) [view usage] : d.68.6.0 |IF3-like |AlbA-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d3k2we_ : (MET253) (LYS308) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudoalteromonas atlantica [TaxId: 342610]
d1i6wb_ : (LEU124) (LEU159) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase A |Bacillus subtilis [TaxId: 1423]
d2id2a_ : (GLY252) (LEU311) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d3afha1 : (LEU24) (GLY87) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d3c3da_ : (MSE1) (SER55) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d1j09a2 : (MET1) (LEU57) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutamyl-tRNA synthetase (GluRS) |Thermus thermophilus [TaxId: 274]
d1xi9c_ : (ALA169) (THR224) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Putative alanine aminotransferase |Pyrococcus furiosus [TaxId: 2261]
d3owod_ : (GLY59) (GLY114) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Zymomonas mobilis [TaxId: 542]
d1y65a_ : (LEU4) (LYS54) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-hexosaminidase NagZ |Vibrio cholerae [TaxId: 666]
d1z3ix1 : (ASN580) (SER636) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d2xvxa_ : (GLY11) (GLY61) [view usage] : c.92.1.0 |Chelatase-like |Chelatase |automated matches |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d4b2oa_ : (MET1) (SER58) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4mu0a1 : (VAL35) (GLY92) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1k77a_ : (ALA201) (SER260) [view usage] : c.1.15.5 |TIM beta/alpha-barrel |Xylose isomerase-like |Hypothetical protein YgbM (EC1530) |Hypothetical protein YgbM (EC1530) |Escherichia coli [TaxId: 562]
d3dgba2 : (ASP136) (LEU191) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 220664]
d1nxzb2 : (HIS77) (GLN141) [view usage] : c.116.1.5 |alpha/beta knot |alpha/beta knot |YggJ C-terminal domain-like |Hypothetical protein HI0303 |Haemophilus influenzae [TaxId: 727]
d3amdb_ : (PRO248) (ILE311) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1wkya2 : (GLY252) (ILE312) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-mannanase |Bacillus sp. JAMB-602 [TaxId: 244966]
d2wmea_ : (LYS256) (ILE313) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4pswa_ : (ASP210) (GLY277) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rhyb2 : (PRO120) (ALA184) [view usage] : d.14.1.9 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Imidazole glycerol phosphate dehydratase |Imidazole glycerol phosphate dehydratase |Fungus (Filobasidiella neoformans) [TaxId: 5207]
d3g68a_ : (THR83) (SER126) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3qzeb_ : (ILE158) (LEU197) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1kjna_ : (GLY7) (ASP55) [view usage] : c.115.1.1 |Hypothetical protein MTH777 (MT0777) |Hypothetical protein MTH777 (MT0777) |Hypothetical protein MTH777 (MT0777) |Hypothetical protein MTH777 (MT0777) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1bvha_ : (ALA1) (ARG53) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Cow (Bos taurus) [TaxId: 9913]
d1v4va_ : (LYS6) (GLY56) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d3rysb_ : (SER135) (PHE182) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
d3n2na_ : (SER143) (ALA192) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ba0d1 : (ILE74) (GLY152) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Archaeoglobus fulgidus [TaxId: 2234]
d1rq8a_ : (ILE20) (ARG70) [view usage] : d.68.4.1 |IF3-like |YhbY-like |YhbY-like |Hypothetical protein SAV1595 |Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, d.68, d.159, c.68, c.82, c.26, c.92, c.80, c.45, e.22, c.37, d.14, c.87, c.62, d.108, c.116, c.52, c.44,
c.115, c.143