Tableau information
Concept source: d3pdub1 amino acid (a.a.) range (THR2)(ALA38)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR2) (GLY8) E1
(GLY10) (GLY24) H2
(THR28) (ARG32) E3
(PRO34) (ALA38) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -159.7° H2
E3 -15.0° -167.2° E3
H4 119.2° -45.0° 134.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wpqa1 : (LYS5) (HIS58) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qfra_ : (GLY39) (GLY85) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Histidine-containing phosphocarrier protein (HPr) |Enterococcus faecalis [TaxId: 1351]
d4bkua_ : (ARG8) (LYS45) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Burkholderia pseudomallei [TaxId: 884204]
d1ddga2 : (THR453) (PHE496) [view usage] : c.25.1.4 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |NADPH-cytochrome p450 reductase-like |Sulfite reductase flavoprotein |Escherichia coli [TaxId: 562]
d4m87a_ : (LYS8) (GLU45) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Neisseria meningitidis [TaxId: 272831]
d2cwxa1 : (ASP308) (MET356) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Pyrococcus horikoshii [TaxId: 53953]
d1fvpa_ : (LYS71) (LYS105) [view usage] : c.1.16.2 |TIM beta/alpha-barrel |Bacterial luciferase-like |Non-fluorescent flavoprotein (luxF, FP390) |Non-fluorescent flavoprotein (luxF, FP390) |Photobacterium phosphoreum [TaxId: 659]
d4qeca_ : (LYS4) (ARG42) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 1282]
d1prya_ : (SER76) (VAL118) [view usage] : c.66.1.3 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Fibrillarin homologue |Fibrillarin homologue |Pyrococcus furiosus [TaxId: 2261]
d1x0xa1 : (SER0) (HIS58) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3pgka_ : (PHE205) (VAL244) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1zzma1 : (ARG152) (SER188) [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Putative deoxyribonuclease YjjV |Escherichia coli [TaxId: 562]
d2pjuc_ : (GLU154) (ARG198) [view usage] : c.92.3.1 |Chelatase-like |PrpR receptor domain-like |PrpR receptor domain-like |Propionate catabolism operon regulatory protein PrpR |Escherichia coli [TaxId: 562]
d1j9za3 : (PRO527) (TYR573) [view usage] : c.25.1.4 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |NADPH-cytochrome p450 reductase-like |NADPH-cytochrome p450 reductase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3gg7a_ : (SER0) (TRP38) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d3pdug1 : (THR3) (ALA38) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d3k96a1 : (HIS6) (GLY48) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
d2peba_ : (TYR56) (ALA95) [view usage] : d.58.55.0 |Ferredoxin-like |DOPA-like |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d2r5ga1 : (GLU13) (LEU61) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2v4mc_ : (GLN631) (GLY683) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4qeda_ : (LYS4) (ARG42) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 1282]
d3pdua1 : (THR2) (ALA38) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1mfpa_ : (ARG8) (LYS45) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Escherichia coli [TaxId: 562]
d3vmfa1 : (THR87) (MET126) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1g8aa_ : (LYS75) (LEU114) [view usage] : c.66.1.3 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Fibrillarin homologue |Fibrillarin homologue |Pyrococcus horikoshii [TaxId: 53953]
d1kepa_ : (LYS5) (ASN44) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptococcus suis, serotype 2 [TaxId: 1307]
d3pdub1 : (THR2) (ALA38) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1kepb_ : (LYS5) (ASN44) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptococcus suis, serotype 2 [TaxId: 1307]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, d.58, c.92, c.66, c.80, c.37, c.47, c.86, c.25, d.94