Tableau information
Concept source: d3t88a_ amino acid (a.a.) range (GLY33)(THR117)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY33) (ILE39) E1
(ARG49) (TYR65) H2
(GLY70) (THR75) E3
(VAL108) (THR117) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -177.6° H2
E3 -23.3° 159.0° E3
H4 -161.9° 19.0° -143.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2pkka_ : (GLU140) (VAL186) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2bzra1 : (ARG108) (SER178) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1px5b1 : (LEU268) (THR313) [view usage] : a.160.1.2 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |Pig (Sus scrofa) [TaxId: 9823]
d1euza1 : (ASP290) (GLY334) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Thermococcus profundus [TaxId: 49899]
d4i42b_ : (GLY33) (THR117) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1su1a_ : (MET1) (GLU62) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Phosphodiesterase yfcE |Escherichia coli [TaxId: 562]
d3t88a_ : (GLY33) (THR117) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1px5a1 : (LYS267) (THR313) [view usage] : a.160.1.2 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |Pig (Sus scrofa) [TaxId: 9823]
d1xeua1 : (SER143) (LEU183) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Listeria monocytogenes [TaxId: 1639]
d1leha1 : (ASP232) (GLY277) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Leucine dehydrogenase |Bacillus sphaericus [TaxId: 1421]
d1kyqb1 : (LYS14) (GLY55) [view usage] : c.2.1.11 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Siroheme synthase N-terminal domain-like |Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vdda_ : (GLY134) (ARG193) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Deinococcus radiodurans [TaxId: 1299]
d3wsea_ : (LYS43) (ASP96) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1hfbf_ : (SER103) (VAL172) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
d1c4oa2 : (SER510) (HIS576) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Nucleotide excision repair enzyme UvrB |Thermus thermophilus [TaxId: 274]
d2r6ib_ : (TYR126) (LYS181) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d1x9ga_ : (ASP100) (GLY153) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Ribonuclease MAR1 |Leishmania donovani [TaxId: 5661]
d1yzva_ : (GLU103) (SER154) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d2b3za1 : (PRO214) (GLY259) [view usage] : c.71.1.2 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |RibD C-terminal domain-like |Riboflavin biosynthesis protein RibD |Bacillus subtilis [TaxId: 1423]
d4i42c_ : (GLY33) (THR117) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1d9xa2 : (SER515) (HIS581) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Nucleotide excision repair enzyme UvrB |Bacillus caldotenax [TaxId: 1395]
d1fqva2 : (GLN196) (ALA239) [view usage] : c.10.1.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |Cyclin A/CDK2-associated p19, Skp2 |Cyclin A/CDK2-associated p19, Skp2 |Human (Homo sapiens) [TaxId: 9606]
d1kwga3 : (PHE455) (LEU506) [view usage] : c.23.16.5 |Flavodoxin-like |Class I glutamine amidotransferase-like |A4 beta-galactosidase middle domain |A4 beta-galactosidase middle domain |Thermus thermophilus [TaxId: 274]
d3tlka_ : (GLN47) (ARG96) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2aama1 : (PHE256) (PRO311) [view usage] : c.1.8.15 |TIM beta/alpha-barrel |(Trans)glycosidases |TM1410-like |Hypothetical protein TM1410 |Thermotoga maritima [TaxId: 2336]
d1kbla2 : (LYS406) (ALA442) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d3tnya_ : (ARG21) (LYS61) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d2uzxa1 : (LYS145) (LEU185) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d1v2xa_ : (LEU23) (VAL74) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |tRNA (Gm18) methyltransferase TrmH |Thermus thermophilus [TaxId: 274]
d4dhlc2 : (THR129) (GLN193) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d1v7lb_ : (GLY52) (GLY99) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Isopropylmalate isomerase LeuD |Pyrococcus horikoshii [TaxId: 53953]
d1tyfa_ : (GLY93) (THR157) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |Clp protease, ClpP subunit |Escherichia coli [TaxId: 562]
d4i42a_ : (GLY33) (THR117) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3hina_ : (LEU27) (TYR104) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d3li2a_ : (ARG56) (GLY96) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 426430]
d2aamc_ : (PHE256) (PRO311) [view usage] : c.1.8.15 |TIM beta/alpha-barrel |(Trans)glycosidases |TM1410-like |Hypothetical protein TM1410 |Thermotoga maritima [TaxId: 2336]
d2bexa_ : (GLN30) (GLN80) [view usage] : c.10.1.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |28-residue LRR |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3li2b_ : (ARG56) (ILE95) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 426430]
d3gfva_ : (LYS36) (ASP74) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d3hinb_ : (LEU27) (TYR104) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d1xn4a_ : (ASP100) (SER153) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Ribonuclease MAR1 |Leishmania major [TaxId: 5664]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.2, d.159, c.92, c.14, c.135, c.72, c.23, c.37, c.71, c.8, c.116, c.33, a.160, e.49, d.381