Tableau information
Concept source: d4mmwa2 amino acid (a.a.) range (ASP129)(GLY198)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP129) (MET138) E1
(GLU151) (ARG163) H2
(LYS166) (THR172) E3
(VAL183) (GLY198) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 160.9° H2
E3 -28.3° 154.5° E3
H4 133.2° -37.1° 160.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ueka1 : (GLY47) (LEU108) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Thermus thermophilus [TaxId: 274]
d1fvab_ : (GLY62) (SER108) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Cow (Bos taurus) [TaxId: 9913]
d1fwka1 : (GLU45) (LYS114) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Homoserine kinase |Methanococcus jannaschii [TaxId: 2190]
d1xzwa2 : (VAL125) (GLU186) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |Plant purple acid phosphatase, catalytic domain |Sweet potato (Ipomoea batatas) [TaxId: 4120]
d2veia_ : (LEU206) (ALA248) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3rdka_ : (LEU263) (ASP337) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d2i9ea_ : (ILE203) (ALA245) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d4naha_ : (HIS3) (VAL60) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
d1lj8a4 : (GLY28) (ASP80) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Mannitol 2-dehydrogenase |Pseudomonas fluorescens [TaxId: 294]
d2qfpa2 : (THR129) (GLU187) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d2j62a2 : (PHE253) (GLU316) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d3lvkb_ : (ASP9) (ARG50) [view usage] : d.68.3.3 |IF3-like |SirA-like |SirA-like |automated matches |Escherichia coli [TaxId: 155864]
d2azna1 : (PRO76) (GLY123) [view usage] : c.71.1.2 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |RibD C-terminal domain-like |HTP reductase |Methanococcus jannaschii [TaxId: 2190]
d3f4wa_ : (ARG161) (HIS211) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d1xzwb2 : (VAL625) (GLU686) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |Plant purple acid phosphatase, catalytic domain |Sweet potato (Ipomoea batatas) [TaxId: 4120]
d1ssda_ : (THR204) (ALA246) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Chicken (Gallus gallus) [TaxId: 9031]
d4n6ea_ : (ARG25) (GLU72) [view usage] : c.1.31.0 |TIM beta/alpha-barrel |ThiG-like |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 797057]
d3lvjc_ : (ASP9) (THR57) [view usage] : d.68.3.3 |IF3-like |SirA-like |SirA-like |automated matches |Escherichia coli [TaxId: 155864]
d3zvia2 : (PRO168) (GLY205) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Clostridium tetanomorphum [TaxId: 1553]
d5ldha1 : (ASP20) (GLU62) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
d1b1aa_ : (ASN33) (ALA81) [view usage] : c.23.6.1 |Flavodoxin-like |Cobalamin (vitamin B12)-binding domain |Cobalamin (vitamin B12)-binding domain |Glutamate mutase, small subunit |Clostridium cochlearium [TaxId: 1494]
d1piia1 : (ASN401) (ALA451) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |N-(5'phosphoribosyl)antranilate isomerase, PRAI |Escherichia coli [TaxId: 562]
d4hhha2 : (ILE375) (GLY434) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |automated matches |Pea (Pisum sativum) [TaxId: 3888]
d3ct2a2 : (ASP136) (VAL184) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 220664]
d3rdkb_ : (SER261) (ASP337) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d1djma_ : (ALA88) (GLY128) [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |CheY protein |Escherichia coli [TaxId: 562]
d2i9eb_ : (ILE203) (ALA245) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d1ej7l1 : (LEU375) (GLY434) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
d1to6a_ : (MET1) (ARG53) [view usage] : c.141.1.1 |Glycerate kinase I |Glycerate kinase I |Glycerate kinase I |Glycerate kinase GlxK |Neisseria meningitidis, (serogroup A) [TaxId: 487]
d4jn6a1 : (GLN194) (ILE247) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2zbta_ : (VAL210) (HIS260) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1kd0a1 : (PRO168) (GLY205) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |beta-Methylaspartase |Clostridium tetanomorphum [TaxId: 1553]
d1pvma4 : (PHE13) (ASN63) [view usage] : d.37.1.1 |CBS-domain pair |CBS-domain pair |CBS-domain pair |Hypothetical protein Ta0289 |Thermoplasma acidophilum [TaxId: 2303]
d2p6ra4 : (ARG341) (GLY400) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Hel308 helicase |Archaeoglobus fulgidus [TaxId: 2234]
d1kkoa1 : (PRO168) (GLY205) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |beta-Methylaspartase |Citrobacter amalonaticus [TaxId: 35703]
d3os4b2 : (GLN279) (PHE329) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2bm0a3 : (GLY522) (GLY597) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor G (EF-G), domain IV |Thermus thermophilus [TaxId: 274]
d2huza_ : (GLU120) (PHE168) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z69a_ : (LYS2) (ASN52) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Methanosarcina barkeri [TaxId: 2208]
d1dqwa_ : (LEU198) (GLN265) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2x63a_ : (LYS46) (THR94) [view usage] : c.130.1.1 |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |automated matches |Campylobacter jejuni [TaxId: 197]
d2vekb_ : (GLN5) (ARG54) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2yzrb_ : (VAL244) (ASN293) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1fnma3 : (GLY522) (GLY597) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor G (EF-G), domain IV |Thermus thermophilus [TaxId: 274]
d1nsja_ : (ARG152) (LYS203) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |N-(5'phosphoribosyl)antranilate isomerase, PRAI |Thermotoga maritima [TaxId: 2336]
d1jqjd2 : (MET1) (ARG39) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d2o56a2 : (GLU126) (ASP177) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
d2bfga2 : (THR152) (ALA216) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-D-xylosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d1wdta3 : (GLY494) (ALA567) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor G (EF-G), domain IV |Thermus thermophilus, EF-G-2 [TaxId: 274]
d1rpxa_ : (ILE182) (THR225) [view usage] : c.1.2.2 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |D-ribulose-5-phosphate 3-epimerase |D-ribulose-5-phosphate 3-epimerase |Potato (Solanum tuberosum) [TaxId: 4113]
d3ejfa_ : (VAL120) (CYS171) [view usage] : c.50.1.0 |Macro domain-like |Macro domain-like |automated matches |automated matches |Avian infectious bronchitis virus (strain beaudette) [TaxId: 11120]
d2f1da1 : (THR33) (GLY92) [view usage] : d.14.1.9 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Imidazole glycerol phosphate dehydratase |Imidazole glycerol phosphate dehydratase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2f84a1 : (TYR260) (GLU322) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
d1jqjc2 : (MET1) (ARG39) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d9ruba1 : (THR364) (ARG418) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rhodospirillum rubrum [TaxId: 1085]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.68, c.2, d.159, d.58, c.26, c.23, c.37, d.14, c.71, d.108, d.37, c.50, c.141, c.130