Tableau information
Concept source: d1qw6a_ amino acid (a.a.) range (LEU424)(VAL474)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU424) (ASP428) E1
(ALA435) (THR450) H2
(SER457) (PRO463) E3
(LYS469) (VAL474) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 157.6° H2
E3 -24.4° 167.2° E3
E4 140.0° -36.8° 155.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4ghla_ : (PRO282) (ILE329) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Lake Victoria marburgvirus [TaxId: 33728]
d2og4a_ : (GLY2252) (THR2308) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Saccharomyces cerevisiae [TaxId: 285006]
d1gxjb_ : (GLY615) (GLY649) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d2p8ra_ : (GLY2169) (THR2224) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Splicing factor Prp8 C-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4hv4b1 : (ARG20) (SER55) [view usage] : c.5.1.0 |MurCD N-terminal domain |MurCD N-terminal domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1f51b_ : (THR291) (GLY354) [view usage] : d.123.1.1 |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Bacillus subtilis [TaxId: 1423]
d4nosa_ : (GLN210) (ASN261) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Human (Homo sapiens) [TaxId: 9606]
d1a79a1 : (LEU129) (TYR176) [view usage] : c.52.2.1 |Restriction endonuclease-like |tRNA-intron endonuclease catalytic domain-like |tRNA-intron endonuclease catalytic domain-like |Tetrameric tRNA splicing endonuclease, C-terminal domain |Methanococcus jannaschii [TaxId: 2190]
d3a7aa1 : (LEU3) (GLY46) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |Two-domain LplA, N-terminal domain |Escherichia coli [TaxId: 562]
d3b48b_ : (MSE1) (PRO48) [view usage] : c.54.1.2 |PTS system fructose IIA component-like |PTS system fructose IIA component-like |DhaM-like |Uncharacterized protein EF1359 |Enterococcus faecalis [TaxId: 1351]
d1ka5a_ : (MET1) (ASN43) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Histidine-containing phosphocarrier protein (HPr) |Staphylococcus aureus [TaxId: 1280]
d1gxkb_ : (ASN616) (ARG650) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d1goja_ : (LEU172) (ASP235) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Fungus (Neurospora crassa) [TaxId: 5141]
d3s9ya_ : (ILE237) (HIS274) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
d2dira1 : (GLY32) (LYS92) [view usage] : d.308.1.3 |THUMP domain |THUMP domain-like |Minimal THUMP |THUMP domain-containing protein 1 |Human (Homo sapiens) [TaxId: 9606]
d2p87a_ : (GLY2169) (THR2224) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Splicing factor Prp8 C-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4kila_ : (PHE117) (ALA156) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza a virus (a/lima/wrair1695p/2009(h1n1)) [TaxId: 985958]
d1vi6a_ : (GLU116) (ALA151) [view usage] : c.23.15.1 |Flavodoxin-like |Ribosomal protein S2 |Ribosomal protein S2 |Ribosomal protein S2 |Archaeoglobus fulgidus [TaxId: 2234]
d1vqza2 : (MSE1) (GLY44) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |LplA-like protein SP1160, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2duwa_ : (ASP72) (GLU107) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1brwa2 : (LYS78) (THR120) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Pyrimidine nucleoside phosphorylase |Bacillus stearothermophilus [TaxId: 1422]
d3qa3e_ : (ASP132) (PHE184) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d3ovqa_ : (GLY4) (PHE49) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n3ya_ : (ASP132) (PHE182) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha-x beta2 |Human (Homo sapiens) [TaxId: 9606]
d2apoa1 : (LYS249) (LYS299) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Methanococcus jannaschii [TaxId: 2190]
d1f51a_ : (THR91) (GLY154) [view usage] : d.123.1.1 |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Bacillus subtilis [TaxId: 1423]
d2qmmb_ : (VAL95) (LYS161) [view usage] : c.116.1.7 |alpha/beta knot |alpha/beta knot |AF1056-like |Uncharacterized protein AF1056 |Archaeoglobus fulgidus [TaxId: 2234]
d1w36c3 : (GLY963) (PRO1010) [view usage] : c.52.1.25 |Restriction endonuclease-like |Restriction endonuclease-like |Exodeoxyribonuclease V beta chain (RecC), C-terminal domain |Exodeoxyribonuclease V beta chain (RecC), C-terminal domain |Escherichia coli [TaxId: 562]
d1gpdg2 : (PHE270) (ASP312) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |American lobster (Homarus americanus) [TaxId: 6706]
d3qa3g_ : (ASP132) (PHE184) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d4ilgc_ : (GLY2252) (THR2308) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4e5gd_ : (PHE117) (THR157) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
d1vi6c_ : (GLU116) (ALA151) [view usage] : c.23.15.1 |Flavodoxin-like |Ribosomal protein S2 |Ribosomal protein S2 |Ribosomal protein S2 |Archaeoglobus fulgidus [TaxId: 2234]
d1t8qd_ : (GLU30) (VAL76) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d2kyra_ : (MET1) (ASN48) [view usage] : c.44.2.0 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ydya_ : (ASN29) (VAL76) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d3dlpx_ : (ARG275) (GLN317) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |4-chlorobenzoyl CoA ligase |Alcaligenes sp. AL3007 [TaxId: 206162]
d1l5aa1 : (PRO69) (ALA124) [view usage] : c.43.1.2 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |NRPS condensation domain (amide synthase) |VibH |Vibrio cholerae [TaxId: 666]
d2vf4x_ : (PRO515) (ASP557) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d2g17a2 : (LEU269) (ASP307) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |N-acetyl-gamma-glutamyl-phosphate reductase ArgC |Salmonella typhimurium [TaxId: 90371]
d2uv4a_ : (ILE204) (LYS243) [view usage] : d.37.1.0 |CBS-domain pair |CBS-domain pair |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qa3i_ : (ASP132) (PHE184) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d4ig8a2 : (LEU268) (GLY309) [view usage] : a.160.1.2 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |Human (Homo sapiens) [TaxId: 9606]
d3ncpa_ : (MET1) (PRO57) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, d.58, c.80, c.23, c.37, d.104, d.81, d.174, c.62, b.122, e.23, c.97, c.43, c.116, d.37, c.52, c.54, a.160, c.27,
c.44, c.5, d.94, d.388, d.308, d.215, d.123