Tableau information
Concept source: d3w9db2 amino acid (a.a.) range (SER171)(SER208)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER171) (SER182) E1
(SER182) (LYS188) H2
(TYR192) (HIS198) E3
(PRO204) (SER208) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 95.9° H2
E3 153.9° 84.2° E3
E4 -43.5° -105.6° 160.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yq9h1 : (SER278) (ASP313) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d2vzoa5 : (GLU864) (PRO897) [view usage] : b.1.4.0 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d4lu1a_ : (HIS63) (HIS126) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1klfb1 : (GLN41) (GLY65) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d1ni0c_ : (LYS78) (GLU116) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d3cmbd_ : (ASP7) (LYS30) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d3i7ta_ : (SER4) (GLY39) [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1c9ub_ : (LEU80) (ILE116) [view usage] : b.68.2.1 |6-bladed beta-propeller |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Acinetobacter calcoaceticus [TaxId: 471]
d3cmbb_ : (ASP7) (LYS30) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d2q2ga1 : (ARG4) (ILE43) [view usage] : b.4.1.0 |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |automated matches |automated matches |Cryptosporidium parvum [TaxId: 353152]
d1f1sa4 : (THR848) (ASN898) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Hyaluronate lyase |Streptococcus agalactiae [TaxId: 1311]
d1tija_ : (GLY12) (THR72) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d4ldca_ : (ASN330) (GLY373) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4b15a_ : (ASP51) (LYS91) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Tamarindus indica [TaxId: 58860]
d1xsia2 : (GLN214) (PRO245) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Putative glucosidase YicI, N-terminal domain |Escherichia coli [TaxId: 562]
d2pvia_ : (LYS78) (GLU116) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d1iqoa_ : (ALA4) (PHE55) [view usage] : d.214.1.1 |Hypothetical protein MTH1880 |Hypothetical protein MTH1880 |Hypothetical protein MTH1880 |Hypothetical protein MTH1880 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1e1ta2 : (PRO386) (SER427) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysU [TaxId: 562]
d1ka9h_ : (GLY120) (THR149) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Thermus thermophilus [TaxId: 274]
d1pmhx_ : (PHE87) (ASN121) [view usage] : b.18.1.18 |Galactose-binding domain-like |Galactose-binding domain-like |Family 27 carbohydrate binding module, CBM27 |Beta-1,4-mannanase ManA |Caldicellulosiruptor saccharolyticus [TaxId: 44001]
d2q4ka_ : (LEU200) (ASP243) [view usage] : d.86.1.2 |eIF4e-like |eIF4e-like |BLES03-like |Basophilic leukemia expressed protein BLES03 |Human (Homo sapiens) [TaxId: 9606]
d1bmv21 : (GLN3110) (LEU3138) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d1lvod_ : (PHE111) (PHE158) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Transmissible gastroenteritis virus [TaxId: 11149]
d1kiub1 : (GLN41) (GLY65) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d1qwta_ : (LYS315) (PRO369) [view usage] : b.26.1.3 |SMAD/FHA domain |SMAD/FHA domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Human (Homo sapiens) [TaxId: 9606]
d1fa3a_ : (GLU4) (GLY57) [view usage] : d.17.1.1 |Cystatin-like |Cystatin/monellin |Monellin |Monellin, B & A chains together |Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]
d2vzua5 : (GLY863) (PRO897) [view usage] : b.1.4.0 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d2wcza_ : (PRO59) (PRO96) [view usage] : c.52.1.0 |Restriction endonuclease-like |Restriction endonuclease-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2okma_ : (THR133) (LYS178) [view usage] : b.2.3.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d1ayra1 : (GLY43) (ASP82) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d1rz8a2 : (SER171) (SER208) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Human (Homo sapiens) [TaxId: 9606]
d1tjma_ : (GLU341) (GLY379) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, b.30, b.47, e.18, c.23, d.104, b.18, b.121, b.2, b.1, d.347, d.17, c.51, d.79, c.52, b.26, b.7, d.86, b.4,
d.214