Tableau information
Concept source: d1i6ub_ amino acid (a.a.) range (LYS23)(GLU64)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS23) (PRO29) E1
(SER31) (GLY45) H2
(GLY48) (PHE52) E3
(GLY59) (GLU64) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 153.9° H2
E3 -34.6° -160.4° E3
E4 162.8° 13.1° 162.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3n1ob_ : (ARG149) (LYS191) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n3ja_ : (LEU34) (LEU62) [view usage] : b.85.7.2 |beta-clip |SET domain |Viral histone H3 Lysine 27 Methyltransferase |Viral histone H3 Lysine 27 Methyltransferase |Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
d4kb2a_ : (ARG63) (GLN104) [view usage] : d.67.3.0 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1u2vd2 : (VAL161) (PRO229) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC2 (34 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d1i1ga2 : (ILE67) (VAL105) [view usage] : d.58.4.2 |Ferredoxin-like |Dimeric alpha+beta barrel |Lrp/AsnC-like transcriptional regulator C-terminal domain |LprA |Pyrococcus furiosus [TaxId: 2261]
d2if9a_ : (ALA157) (HIS201) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d2omof_ : (TYR2) (LYS57) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
d1f7ua3 : (ASP68) (PHE114) [view usage] : d.67.2.1 |RRF/tRNA synthetase additional domain-like |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4fvra_ : (LEU579) (GLU627) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kb4a_ : (ARG63) (VAL102) [view usage] : d.67.3.0 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2zosb_ : (TYR142) (HIS175) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1wqga_ : (ARG63) (GLN104) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1wzcb_ : (TYR142) (HIS175) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) |Pyrococcus horikoshii [TaxId: 53953]
d3dnpa_ : (PRO156) (PRO195) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3e05e_ : (GLU343) (TRP401) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d2omog_ : (TYR2) (LYS57) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
d2omod_ : (TYR2) (LYS57) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
d2ftrb_ : (MSE6) (TYR66) [view usage] : d.58.4.15 |Ferredoxin-like |Dimeric alpha+beta barrel |EthD-like |Hypothetical protein BH0200 |Bacillus halodurans [TaxId: 86665]
d2bdwb_ : (ALA40) (ASP90) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3bzna_ : (ILE70) (PRO110) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |automated matches |Escherichia coli [TaxId: 562]
d2r92k1 : (VAL31) (THR77) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b0pa4 : (GLY416) (GLY471) [view usage] : c.64.1.1 |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Desulfovibrio africanus [TaxId: 873]
d2ipra_ : (ALA157) (HIS201) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d2p8ia_ : (SER11) (THR64) [view usage] : d.58.55.1 |Ferredoxin-like |DOPA-like |DOPA dioxygenase-like |Putative dioxygenase BxeB0224 |Burkholderia xenovorans [TaxId: 36873]
d1nf2a_ : (LYS147) (VAL185) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Hypothetical protein TM0651 |Thermotoga maritima [TaxId: 2336]
d2fufa_ : (ALA157) (HIS201) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d4inka_ : (HIS32) (VAL84) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d2nxea1 : (MET1) (PRO40) [view usage] : c.66.1.39 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Ribosomal protein L11 methyltransferase PrmA |PrmA-like protein TTHA0656 (TT0836) |Thermus thermophilus [TaxId: 274]
d3niwa_ : (LYS152) (VAL190) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d4qjbb_ : (TYR170) (PHE209) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2p8ic_ : (SER11) (PHE63) [view usage] : d.58.55.1 |Ferredoxin-like |DOPA-like |DOPA dioxygenase-like |Putative dioxygenase BxeB0224 |Burkholderia xenovorans [TaxId: 36873]
d2omoc_ : (TYR2) (LYS57) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, c.108, b.47, c.66, d.144, b.85, d.140, d.67, d.65, i.8, d.89, d.198, d.161, c.64