Protein Concepts Dictionary

Tableau information

Concept source:  d4gzoa_  amino acid (a.a.) range (PHE100)(LEU134)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: EHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PHE100)  (ASN104) E1
	  (ASN104)  (ALA110) H2
	  (TYR121)  (PRO126) E3
	  (LYS128)  (LEU134) E4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                          
H2       29.0°   H2                   
E3      134.8°  107.5°   E3            
E4      -39.5°  -67.7°  152.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3tiaa_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Influenza a virus [TaxId: 382827]
 d1mg2a_ :   (ASP258)  (LEU297)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
 d2ht5a_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
 d2bata_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Influenza neuraminidase |Influenza A virus, different strains [TaxId: 11320]
 d4h53a_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Influenza a virus [TaxId: 382827]
 d1hmja_ :    (PRO35)   (ILE77)   [view usage] : d.78.1.1 |RPB5-like RNA polymerase subunit |RPB5-like RNA polymerase subunit |RPB5 |RNA polymerase subunit RBP5 (RNA polymerase subunit H) |Methanococcus jannaschii [TaxId: 2190]
 d4mjua_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus [TaxId: 385580]
 d2aeqa_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Influenza A virus [TaxId: 11320]
 d3o9ka_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus (a/duck/ukraine/1/1963(h3n8)) [TaxId: 385580]
 d4hzva_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
 d1xnaa_ :   (ARG107)  (SER151)   [view usage] : b.18.1.8 |Galactose-binding domain-like |Galactose-binding domain-like |N-terminal domain of xrcc1 |N-terminal domain of xrcc1 |Human (Homo sapiens) [TaxId: 9606]
 d2mtah_ :   (ASP245)  (LEU284)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
 d2bbkh_ :   (ASP245)  (LEU284)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
 d4m3ma_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus [TaxId: 385580]
 d4mjva_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus [TaxId: 385580]
 d1a3ad_ :    (SER60)  (ARG107)   [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Phosphotransferase IIa-mannitol |Escherichia coli [TaxId: 562]
 d4d8sa_ :   (PHE100)  (LEU134)   [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
 d1a3ac_ :    (SER60)  (ARG107)   [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Phosphotransferase IIa-mannitol |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.68,    b.69,    b.18,   d.112,    d.78