Tableau information
Concept source: d3r5gb_ amino acid (a.a.) range (GLY370)(ASP410)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY370) (SER375) E1
(SER375) (ILE382) H2
(ILE386) (GLY392) E3
(GLN404) (ASP410) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -95.4° H2
E3 -75.4° -148.6° E3
E4 138.4° 45.5° 144.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jnpa_ : (ASP141) (TYR168) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
d1jgia2 : (TYR209) (TRP247) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylosucrase |Neisseria polysaccharea [TaxId: 489]
d2wkma_ : (LYS1103) (PRO1158) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3i99a2 : (ASN246) (ALA276) [view usage] : d.146.1.0 |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1t0ga_ : (HIS8) (VAL40) [view usage] : d.120.1.2 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Steroid-binding domain |Putative steroid binding protein AT2G24940 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4gfga_ : (VAL395) (GLU449) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Tyrosine-protein kinase SYK |Human (Homo sapiens) [TaxId: 9606]
d1nnea4 : (TYR40) (PRO74) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Thermus aquaticus [TaxId: 271]
d1ydla1 : (LYS6) (VAL45) [view usage] : d.295.1.1 |TFB5-like |TFB5-like |TFB5-like |General transcription factor IIH polypeptide 5, TFB5 |Human (Homo sapiens) [TaxId: 9606]
d1mbba2 : (ASN233) (ALA265) [view usage] : d.146.1.1 |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Escherichia coli [TaxId: 562]
d1yk9a_ : (ILE386) (ARG424) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Mycobacterium tuberculosis
d3rmtc_ : (GLY46) (LYS77) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d3ff6a1 : (TYR1861) (THR1894) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sqfa2 : (PRO173) (THR213) [view usage] : c.66.1.38 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |NOL1/NOP2/sun |Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain |Escherichia coli [TaxId: 562]
d1we5a4 : (PRO348) (THR390) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Putative glucosidase YicI, domain 2 |Escherichia coli [TaxId: 562]
d3r5gb_ : (GLY370) (ASP410) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1m0va_ : (ALA64) (SER102) [view usage] : d.195.1.1 |YopH tyrosine phosphatase N-terminal domain |YopH tyrosine phosphatase N-terminal domain |YopH tyrosine phosphatase N-terminal domain |YopH tyrosine phosphatase N-terminal domain |Yersinia pseudotuberculosis [TaxId: 633]
d1iawa_ : (GLY245) (GLU282) [view usage] : c.52.1.9 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease NaeI |Restriction endonuclease NaeI |Nocardia aerocolonigenes [TaxId: 68170]
d3lf5a_ : (ARG53) (ASN81) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bmfd3 : (ILE82) (HIS117) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of beta subunit of F1 ATP synthase |Cow (Bos taurus) [TaxId: 9913]
d1z7mb_ : (SER46) (LEU81) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Lactococcus lactis [TaxId: 1358]
d2rfka1 : (PRO254) (LYS304) [view usage] : b.122.1.0 |PUA domain-like |PUA domain-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2keoa_ : (GLU21) (ASP50) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vwja2 : (ILE662) (LYS705) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermococcus gorgonarius [TaxId: 71997]
d4flqa1 : (TYR209) (TRP247) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d2gg4a_ : (LEU266) (SER308) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d3ueqa1 : (TYR209) (TRP247) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d1wb9a4 : (TYR37) (GLY70) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Escherichia coli [TaxId: 562]
d1wbda4 : (TYR37) (GLY70) [view usage] : d.75.2.0 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1p53a3 : (PHE410) (LEU448) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Intercellular adhesion molecule-1, ICAM-1 |Human (Homo sapiens) [TaxId: 9606]
d2mp4a_ : (GLY4) (ALA41) [view usage] : d.109.1.0 |Gelsolin-like |Actin depolymerizing proteins |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1ng9a4 : (PHE36) (GLY70) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Escherichia coli [TaxId: 562]
d1uxya2 : (ASN233) (ALA265) [view usage] : d.146.1.1 |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Escherichia coli [TaxId: 562]
d1oh5a4 : (TYR37) (GLY70) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, d.68, d.58, c.66, d.92, c.14, d.144, c.37, d.104, b.122, b.1, c.52, d.109, d.120, d.295, d.195, d.75, d.146