Tableau information
Concept source: d1ukfa_ amino acid (a.a.) range (GLY231)(VAL268)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY231) (SER235) E1
(SER236) (ASN255) H2
(ASN255) (CYS260) E3
(ASN262) (VAL268) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 141.5° H2
E3 -56.3° 133.6° E3
E4 -82.0° 136.4° -59.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3i9v5_ : (ASN24) (LEU58) [view usage] : d.307.1.1 |Nqo5-like |Nqo5-like |Nqo5-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4krmb_ : (ALA103) (SER124) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2p8ra_ : (GLY2094) (ASP2128) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Splicing factor Prp8 C-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2iv7a1 : (GLU50) (ALA98) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Lipopolysaccharide core biosynthesis protein RfaG |Escherichia coli [TaxId: 562]
d1fuia2 : (ALA52) (PHE110) [view usage] : c.85.1.1 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |L-fucose isomerase, N-terminal and second domains |L-fucose isomerase, N-terminal and second domains |Escherichia coli [TaxId: 562]
d1d9aa_ : (ALA2) (ALA38) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Hu antigen C (Huc) |Mouse (Mus musculus) [TaxId: 10090]
d1htya3 : (ASN371) (ARG410) [view usage] : c.6.2.1 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |alpha-mannosidase |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1yraa_ : (MET498) (VAL50) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |ATP(GTP)-binding protein PAB0955 |Pyrococcus abyssi [TaxId: 29292]
d1j5ua_ : (ASP16) (MSE53) [view usage] : d.208.1.1 |MTH1598-like |MTH1598-like |MTH1598-like |Hypothetical protein TM1083 |Thermotoga maritima [TaxId: 2336]
d1xffb_ : (THR43) (HIS97) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glucosamine 6-phosphate synthase, N-terminal domain |Escherichia coli [TaxId: 562]
d1ri8a1 : (GLY103) (SER125) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Camel (Camelus dromedarius) [TaxId: 9838]
d1t47a1 : (ASP24) (GLY53) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |4-hydroxyphenylpyruvate dioxygenase, HppD |Streptomyces avermitilis [TaxId: 33903]
d2p87a_ : (GLY2094) (ASP2128) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Splicing factor Prp8 C-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2eb6a_ : (MET87) (ALA114) [view usage] : d.177.1.0 |FAH |FAH |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2x3dd_ : (GLU45) (GLY83) [view usage] : d.58.61.0 |Ferredoxin-like |MTH889-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1t3na1 : (SER303) (ARG348) [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DNA polymerase iota |Human (Homo sapiens) [TaxId: 9606]
d1yf2a1 : (ASP19) (ILE56) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MJ0130 |Methanocaldococcus jannaschii [TaxId: 2190]
d1ukfa_ : (GLY231) (VAL268) [view usage] : d.3.1.10 |Cysteine proteinases |Cysteine proteinases |Avirulence protein Avrpph3 |Avirulence protein Avrpph3 |Pseudomonas syringae pv. phaseolicola [TaxId: 319]
d3l0ca_ : (SER180) (ASP227) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3buda3 : (ASN371) (ARG410) [view usage] : c.6.2.1 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |alpha-mannosidase |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3g9ab_ : (LEU100) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d1mzpa_ : (PRO163) (ARG217) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Sulfolobus acidocaldarius [TaxId: 2285]
d3k80b_ : (GLY102) (SER123) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1yrba_ : (MET498) (VAL50) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |ATP(GTP)-binding protein PAB0955 |Pyrococcus abyssi [TaxId: 29292]
d1hwwa3 : (ASN371) (ARG410) [view usage] : c.6.2.1 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |alpha-mannosidase |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2iw1a_ : (GLU50) (ALA98) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Lipopolysaccharide core biosynthesis protein RfaG |Escherichia coli [TaxId: 562]
d2qh0a_ : (ILE8) (GLU37) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 1488]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.6, d.58, c.108, c.37, d.153, d.3, c.87, c.85, d.32, b.1, c.97, d.177, d.287, e.24, d.240, d.307, d.208