Tableau information
Concept source: d1ilva_ amino acid (a.a.) range (ARG2)(LYS55)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG2) (ASP8) E1
(SER13) (SER24) H2
(GLU28) (VAL32) E3
(PRO50) (LYS55) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 170.0° H2
E3 -28.8° 161.2° E3
E4 115.5° -57.1° 136.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1tcuc_ : (GLN84) (LEU134) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d3ihsb_ : (MSE1) (ASN43) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |automated matches |Bacillus anthracis [TaxId: 198094]
d2j9de_ : (GLY-1) (LEU55) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d1t9za_ : (ILE91) (ASN111) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 |Human (Homo sapiens) [TaxId: 9606]
d1u0oc1 : (ASP514) (TYR565) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |von Willebrand factor A1 domain, vWA1 |Mouse (Mus musculus) [TaxId: 10090]
d1wsca1 : (PRO123) (LEU158) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |Hypothetical protein ST0229 |Sulfolobus tokodaii [TaxId: 111955]
d2e55a_ : (GLU69) (TYR112) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d4adub_ : (GLY23) (SER64) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Plasmodium berghei [TaxId: 5821]
d1fvpa_ : (LYS3) (GLY69) [view usage] : c.1.16.2 |TIM beta/alpha-barrel |Bacterial luciferase-like |Non-fluorescent flavoprotein (luxF, FP390) |Non-fluorescent flavoprotein (luxF, FP390) |Photobacterium phosphoreum [TaxId: 659]
d3m84a2 : (GLY307) (ILE347) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain |Francisella tularensis [TaxId: 177416]
d1ckma2 : (LEU185) (LYS236) [view usage] : d.142.2.3 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |mRNA capping enzyme |RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain |Chlorella virus PBCV-1 [TaxId: 10506]
d1i29a_ : (GLU140) (PRO182) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |NifS-like protein/selenocysteine lyase |Escherichia coli [TaxId: 562]
d4c2bc_ : (ASP1277) (TYR1328) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3le3a_ : (MET1) (ASN43) [view usage] : d.94.1.0 |HPr-like |HPr-like |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1shtx_ : (ARG41) (LEU93) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Capillary morphogenesis protein 2 domain |Human (Homo sapiens) [TaxId: 9606]
d3lfgb_ : (MET1) (ASN43) [view usage] : d.94.1.0 |HPr-like |HPr-like |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1cjbc_ : (PHE70) (VAL128) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine PRTase (HGPRTase) |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1vaja1 : (PRO113) (LEU147) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |Hypothetical protein PH0010 |Pyrococcus horikoshii [TaxId: 53953]
d1jmva_ : (LYS3) (VAL52) [view usage] : c.26.2.4 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |Universal stress protein-like |Universal stress protein A, UspA |Haemophilus influenzae [TaxId: 727]
d3r25b2 : (ASP121) (GLN180) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Vibrionales bacterium [TaxId: 391574]
d2i2qa_ : (GLU38) (ILE81) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d4as7a_ : (LEU199) (VAL264) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2euaa1 : (THR161) (ALA208) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Menaquinone-specific isochorismate synthase MenF |Escherichia coli [TaxId: 562]
d1uaya_ : (ARG3) (GLY38) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Type II 3-hydroxyacyl-CoA dehydrogenase |Thermus thermophilus [TaxId: 274]
d3lpna2 : (VAL157) (LYS195) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d2odpa1 : (GLY231) (MET286) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lpnb2 : (VAL157) (LYS195) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d2i6qa1 : (GLY231) (MET286) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nbaa_ : (THR2) (MET44) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2p90a1 : (PHE104) (GLY157) [view usage] : c.56.8.1 |Phosphorylase/hydrolase-like |Cgl1923-like |Cgl1923-like |Hypothetical protein Cgl1923 |Corynebacterium glutamicum [TaxId: 1718]
d1ck4a_ : (ASP148) (PHE198) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha1-beta1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4kt0d_ : (GLY53) (TYR96) [view usage] : d.187.1.1 |Photosystem I subunit PsaD |Photosystem I subunit PsaD |Photosystem I subunit PsaD |automated matches |Synechocystis sp. [TaxId: 1148]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.2, d.58, c.108, c.26, c.56, c.37, c.62, c.61, d.142, d.109, d.139, d.94, c.106, d.187, d.161, d.309