Tableau information
Concept source: d1j7db_ amino acid (a.a.) range (HIS36)(THR73)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS36) (ALA40) E1
(SER45) (GLY50) H2
(GLY50) (LEU58) E3
(PRO67) (THR73) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -119.2° H2
E3 145.3° -88.6° E3
E4 -60.6° 76.9° 152.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3sz6a_ : (GLY36) (LYS68) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3l7zg1 : (VAL137) (ASN181) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d2if6b_ : (ASP25) (ALA65) [view usage] : d.3.1.21 |Cysteine proteinases |Cysteine proteinases |YiiX-like |Hypothetical protein YiiX |Escherichia coli [TaxId: 562]
d1jyta_ : (LYS8) (LEU72) [view usage] : b.94.1.1 |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jpdx1 : (SER294) (LEU321) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |L-Ala-D/L-Glu epimerase |Escherichia coli [TaxId: 562]
d2if6a1 : (ASP25) (ALA65) [view usage] : d.3.1.21 |Cysteine proteinases |Cysteine proteinases |YiiX-like |Hypothetical protein YiiX |Escherichia coli [TaxId: 562]
d1vhza_ : (ASN105) (GLU138) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d1vhzb_ : (ASN105) (GLU138) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d2f0ra_ : (ASN66) (GLY100) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1fc7a3 : (GLY196) (GLN244) [view usage] : b.36.1.3 |PDZ domain-like |PDZ domain-like |Tail specific protease PDZ domain |Photosystem II D1 C-terminal processing protease |Algae (Scenedesmus obliquus) [TaxId: 3088]
d2v0fa1 : (GLY2629) (GLY2660) [view usage] : d.76.2.1 |GYF/BRK domain-like |BRK domain-like |BRK domain-like |Chromodomain-helicase-DNA-binding protein 7, CHD7 |Human (Homo sapiens) [TaxId: 9606]
d1t2wa_ : (GLN113) (LYS154) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d3sdcd1 : (ASN84) (VAL117) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ayrb2 : (SER309) (HIS357) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d1ayra2 : (SER309) (HIS357) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d2fz1b_ : (TRP75) (CYS117) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |automated matches |Turnip yellow mosaic virus [TaxId: 12155]
d2gfqa1 : (LYS2) (GLU34) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d2yt8a_ : (CYS32) (GLU53) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ogmx1 : (ASN51) (ALA116) [view usage] : b.133.1.1 |Dextranase, N-terminal domain |Dextranase, N-terminal domain |Dextranase, N-terminal domain |Dextranase, N-terminal domain |Penicillium minioluteum [TaxId: 28574]
d1tg7a1 : (ASN575) (GLY615) [view usage] : b.149.1.1 |Beta-galactosidase LacA, domain 3 |Beta-galactosidase LacA, domain 3 |Beta-galactosidase LacA, domain 3 |Beta-galactosidase LacA, domain 3 |Penicillium sp. [TaxId: 5081]
d2izwb_ : (PRO180) (ASP227) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Ryegrass mottle virus [TaxId: 119910]
d1egca2 : (GLY205) (PRO233) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Human (Homo sapiens) [TaxId: 9606]
d4jvzb_ : (GLY8) (VAL42) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Thermosynechococcus elongatus [TaxId: 197221]
d2csoa1 : (TYR81) (GLU120) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d2hldd2 : (ILE83) (HIS118) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vhga_ : (ASN105) (GLU138) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d3vxva_ : (GLY76) (SER107) [view usage] : d.10.1.0 |DNA-binding domain |DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3vyba_ : (GLY76) (SER107) [view usage] : d.10.1.0 |DNA-binding domain |DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3oehd2 : (ILE83) (HIS118) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.56, b.40, c.37, e.6, d.14, b.121, d.3, b.1, d.20, a.4, d.113, b.36, b.133, b.100, b.149, d.76, b.94, d.10