Protein Concepts Dictionary

Tableau information

Concept source:  d1i4td_  amino acid (a.a.) range (GLN2)(ALA59)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: EHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLN2)   (ASP11) E1
	   (GLY15)   (ASN26) H2
	   (ASP38)   (VAL44) E3
	   (LYS49)   (ALA59) E4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                          
H2      143.3°   H2                   
E3      134.4°   42.2°   E3            
E4      -26.4° -149.7°  160.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4o2ra_ :     (GLN3)   (THR61)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4lx0a_ :     (ASP9)   (GLN70)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1uawa_ :    (GLY62)   (ALA95)   [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Musashi-1 |Mouse (Mus musculus) [TaxId: 10090]
 d2zi8b2 :   (LEU216)  (GLY268)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d1yzka_ :     (ASP9)   (ALA68)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1nrka2 :   (GLU114)  (GLU155)   [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Hypothetical protein YgfZ, N-terminal domain |Escherichia coli [TaxId: 562]
 d1hana2 :   (PHE211)  (GLY262)   [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) |Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]
 d3hpva2 :   (CYS217)  (PHE269)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Pseudomonas sp. [TaxId: 237609]
 d2kb0a_ :     (GLN2)   (THR58)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
 d1kw3b2 :   (PHE210)  (GLY262)   [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) |Pseudomonas sp. [TaxId: 306]
 d2zi8a2 :   (LEU216)  (GLY268)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d2atxb_ :    (LEU16)   (ALA73)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |RhoQ |Human (Homo sapiens) [TaxId: 9606]
 d1z0ac_ :     (ALA2)   (ALA63)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3hpyc2 :   (CYS217)  (PHE269)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Pseudomonas sp. [TaxId: 237609]
 d1eila2 :   (PHE210)  (GLY262)   [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) |Pseudomonas sp. [TaxId: 306]
 d1b64a_ :     (ALA4)   (VAL46)   [view usage] : d.58.12.1 |Ferredoxin-like |eEF-1beta-like |eEF-1beta-like |Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta |Human (Homo sapiens) [TaxId: 9606]
 d2zyqa2 :   (LEU216)  (GLY268)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d3lawd_ :     (LYS5)   (ALA65)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1xtqa1 :     (GLN3)   (THR61)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |GTP-binding protein RheB |Human (Homo sapiens) [TaxId: 9606]
 d2f9ma_ :     (ASP9)   (ALA68)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab11b |Human (Homo sapiens) [TaxId: 9606]
 d1qwxa_ :     (GLN3)   (ARG43)   [view usage] : b.61.2.2 |Streptavidin-like |beta-Barrel protease inhibitors |Staphostatin |Staphostatin B (SspC) |Staphylococcus aureus [TaxId: 1280]
 d1egaa1 :     (ASP4)   (VAL61)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |GTPase Era, N-terminal domain |Escherichia coli [TaxId: 562]
 d2lxia_ :    (GLY45)   (TYR79)   [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2p62a1 :     (ARG2)   (ALA65)   [view usage] : e.67.1.1 |PH0156-like |PH0156-like |PH0156-like |Hypothetical protein PH0156 |Pyrococcus horikoshii [TaxId: 53953]
 d1oiwa_ :     (ASP9)   (ALA68)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab11a |Human (Homo sapiens) [TaxId: 9606]
 d1r8qa_ :    (MET18)   (GLY69)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARF1 [TaxId: 9606]
 d1oixa_ :     (ASP9)   (ALA68)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab11a |Human (Homo sapiens) [TaxId: 9606]
 d1h65b_ :    (ASN38)   (ILE98)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Chloroplast protein translocon GTPase Toc34 |Pea (Pisum sativum) [TaxId: 3888]
 d4o2la_ :     (SER4)   (THR61)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1h65c_ :    (ASN38)   (ASP93)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Chloroplast protein translocon GTPase Toc34 |Pea (Pisum sativum) [TaxId: 3888]
 d3cpha_ :    (LYS22)   (ASP75)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.58,    c.37,    d.32,   d.250,    b.61,    e.67