Tableau information
Concept source: d3lqvb_ amino acid (a.a.) range (ARG19)(GLU65)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG19) (ASN25) E1
(THR31) (GLY43) H2
(GLY43) (GLY51) E3
(ALA60) (GLU65) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 133.2° H2
E3 -44.1° 143.1° E3
E4 158.4° -41.9° 156.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vs6t1 : (SER27) (LYS88) [view usage] : d.12.1.1 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |L23p |Ribosomal protein L23 |Escherichia coli [TaxId: 562]
d1brza_ : (CYS4) (TYR51) [view usage] : g.3.7.5 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Plant defensins |Brazzein |J'oublie (Pentadiplandra brazzeana) [TaxId: 43545]
d2m08a_ : (GLY53) (ARG91) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Nitrosopumilus maritimus [TaxId: 436308]
d3bbov1 : (ASN132) (ASN179) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d3d71a2 : (ALA218) (ARG275) [view usage] : d.60.1.1 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |Multidrug-binding domain of transcription activator BmrR |automated matches |Bacillus subtilis [TaxId: 1423]
d2i5ea1 : (PRO87) (LYS129) [view usage] : c.68.1.21 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MM2497-like |Hypothetical protein MM2497 |Methanosarcina mazei [TaxId: 2209]
d2h6la1 : (GLY9) (SER48) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |Hypothetical protein AF0104 |Archaeoglobus fulgidus [TaxId: 2234]
d3b0ha3 : (GLY363) (ASN408) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1s1ij_ : (GLU14) (GLY72) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1si7a_ : (GLU42) (ARG92) [view usage] : d.265.1.4 |Pseudouridine synthase |Pseudouridine synthase |tRNA pseudouridine synthase TruD |tRNA pseudouridine synthase TruD |Escherichia coli [TaxId: 562]
d1tljb_ : (ARG93) (THR145) [view usage] : d.282.1.1 |SSo0622-like |SSo0622-like |SSo0622-like |Hypothetical protein SSo0622 |Sulfolobus solfataricus [TaxId: 2287]
d1ahoa_ : (GLY4) (TYR49) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Scorpion (Androctonus australis hector), Toxin II [TaxId: 70175]
d3d7ab_ : (GLU7) (LYS52) [view usage] : d.77.1.0 |RL5-like |RL5-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1raid1 : (GLY15) (GLU62) [view usage] : d.58.2.1 |Ferredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase |Escherichia coli [TaxId: 562]
d1vk3a4 : (PHE544) (SER585) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 |Thermotoga maritima [TaxId: 2336]
d3d6ya2 : (ALA218) (GLU275) [view usage] : d.60.1.1 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |Multidrug-binding domain of transcription activator BmrR |automated matches |Bacillus subtilis [TaxId: 1423]
d1zl3a2 : (GLY13) (GLY60) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Escherichia coli [TaxId: 562]
d3d7aa_ : (GLU7) (LYS52) [view usage] : d.77.1.0 |RL5-like |RL5-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1q4ra_ : (PRO10) (THR70) [view usage] : d.58.4.4 |Ferredoxin-like |Dimeric alpha+beta barrel |Plant stress-induced protein |Hypothetical protein AT3G17210.1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2m8bb_ : (CYS4) (PRO50) [view usage] : g.3.7.5 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Plant defensins |automated matches |Arabidopsis halleri [TaxId: 81970]
d2f9ja1 : (ARG19) (GLU65) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Pre-mRNA branch site protein p14 |Human (Homo sapiens) [TaxId: 9606]
d1phza1 : (GLY33) (THR81) [view usage] : d.58.18.3 |Ferredoxin-like |ACT-like |Phenylalanine metabolism regulatory domain |Phenylalanine hydroxylase N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2rfka2 : (PHE49) (GLU97) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2zica2 : (GLN507) (LYS534) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Streptococcus mutans
d2ogkb_ : (GLU7) (LYS60) [view usage] : d.77.1.2 |RL5-like |RL5-like |SSO1042-like |Hypothetical protein AF2318 |Archaeoglobus fulgidus [TaxId: 2234]
d1j1ta_ : (ILE17) (GLU54) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Alginate lyase |Alteromonas sp. [TaxId: 232]
d3pt6a5 : (ARG1264) (ALA1322) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d3cmbb_ : (LYS30) (GLU69) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d1k8wa5 : (GLY13) (GLY60) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Escherichia coli [TaxId: 562]
d2hvaa1 : (GLY39) (LYS96) [view usage] : d.60.1.4 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |SOUL heme-binding protein |Heme-binding protein 1 |Mouse (Mus musculus) [TaxId: 10090]
d2apna_ : (PRO8) (PHE51) [view usage] : b.124.1.0 |HesB-like domain |HesB-like domain |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d2ab5b1 : (LEU291) (ASN337) [view usage] : d.95.2.0 |Homing endonuclease-like |Homing endonucleases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2i5eb_ : (PRO87) (LYS129) [view usage] : c.68.1.21 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MM2497-like |Hypothetical protein MM2497 |Methanosarcina mazei [TaxId: 2209]
d1regy_ : (ILE2) (VAL48) [view usage] : d.58.27.1 |Ferredoxin-like |Translational regulator protein regA |Translational regulator protein regA |Translational regulator protein regA |Bacteriophage T4 [TaxId: 10665]
d2qj4a1 : (LEU57) (PRO101) [view usage] : g.10.1.1 |Hairpin loop containing domain-like |Hairpin loop containing domain-like |Hairpin loop containing domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3pt6b5 : (ARG1264) (ALA1322) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d2pbcb_ : (HIS55) (LYS135) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1chza_ : (ASP3) (ILE49) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Chinese scorpion (Buthus martensii), toxin m2 [TaxId: 34649]
d2h6lb_ : (GLY9) (SER48) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3o69b_ : (CYS84) (ASP138) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d3hjwa1 : (PHE49) (GLU97) [view usage] : d.265.1.0 |Pseudouridine synthase |Pseudouridine synthase |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2i2tt1 : (ASN28) (LYS88) [view usage] : d.12.1.1 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |L23p |Ribosomal protein L23 |Escherichia coli [TaxId: 562]
d4njya_ : (PRO86) (GLY155) [view usage] : d.13.1.1 |HIT-like |HIT-like |HIT (HINT, histidine triad) family of protein kinase-interacting proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1telb2 : (LEU2028) (ALA2093) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Chlorobium tepidum [TaxId: 1097]
d2ogkd_ : (LYS3) (LYS60) [view usage] : d.77.1.2 |RL5-like |RL5-like |SSO1042-like |Hypothetical protein AF2318 |Archaeoglobus fulgidus [TaxId: 2234]
d1rlma_ : (PHE147) (ILE186) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar phosphatase SupH (YbiV) |Escherichia coli [TaxId: 562]
d1ct9a2 : (ALA1) (ILE52) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Asparagine synthetase B, N-terminal domain |Escherichia coli [TaxId: 562]
d1r3ea2 : (GLY13) (ASN60) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Thermotoga maritima [TaxId: 2336]
d2ywwa1 : (GLY15) (GLU61) [view usage] : d.58.2.0 |Ferredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3d70a2 : (ALA218) (ARG275) [view usage] : d.60.1.1 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |Multidrug-binding domain of transcription activator BmrR |Multidrug-binding domain of transcription activator BmrR |Bacillus subtilis [TaxId: 1423]
d1t7ea_ : (ASP3) (ILE49) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Chinese scorpion (Buthus martensii), toxin m1 [TaxId: 34649]
d1lqha_ : (MET1) (ALA51) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |alpha toxin |Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]
d2kbka_ : (ALA4) (LYS50) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |automated matches |Mesobuthus martensii [TaxId: 34649]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, c.68, c.108, b.29, c.66, d.153, d.347, d.139, d.95, d.13, g.10, d.113, d.26, b.71, d.290, d.265, d.12, d.77, g.3,
d.60, b.124, d.282