Tableau information
Concept source: d2vgia3 amino acid (a.a.) range (PHE513)(VAL570)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE513) (GLU519) E1
(TRP525) (GLY544) H2
(ASP550) (THR556) E3
(ASN566) (VAL570) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 131.3° H2
E3 -63.9° 144.3° E3
E4 102.2° -49.0° 165.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1p9ba_ : (GLU378) (LYS437) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3vehb_ : (SER16) (ALA58) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1j4ba_ : (GLU402) (PHE457) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Mouse (Mus musculus) [TaxId: 10090]
d1hnha2 : (SER176) (ALA208) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Escherichia coli [TaxId: 562]
d3dblf_ : (PRO350) (SER396) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2vgba3 : (PHE513) (VAL570) [view usage] : c.49.1.1 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |Pyruvate kinase, C-terminal domain |Pyruvate kinase, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1ad2a_ : (GLY169) (ASN225) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Thermus thermophilus [TaxId: 274]
d2zlea1 : (LYS271) (LEU309) [view usage] : b.36.1.4 |PDZ domain-like |PDZ domain-like |HtrA-like serine proteases |Protease Do (DegP, HtrA), C-terminal domains |Escherichia coli [TaxId: 562]
d2dsyd_ : (GLY38) (LEU81) [view usage] : d.304.1.2 |TTHA1013/TTHA0281-like |TTHA1013/TTHA0281-like |TTHA0281-like |automated matches |Thermus thermophilus [TaxId: 274]
d1zhoa1 : (GLY169) (ASN225) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Thermus thermophilus [TaxId: 274]
d4dfea2 : (LEU186) (ASP220) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d1ylxa1 : (MSE1) (ASN48) [view usage] : d.82.5.1 |N domain of copper amine oxidase-like |GK1464-like |GK1464-like |Hypothetical protein, GK1464 ortholog |Bacillus stearothermophilus [TaxId: 1422]
d2o5fb_ : (SER67) (SER123) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]
d3v7ia1 : (ALA248) (ASP275) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d3dbrd_ : (GLN351) (TYR393) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1p8la2 : (ILE138) (LYS188) [view usage] : d.142.2.1 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |ATP-dependent DNA ligase catalytic domain |ATP-dependent DNA ligase, N-terminal domain |Chlorella virus PBCV-1 [TaxId: 10506]
d3stvb_ : (LEU113) (GLY156) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Lycopersicon hirsutum [TaxId: 283673]
d1pkya3 : (GLY414) (VAL467) [view usage] : c.49.1.1 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |Pyruvate kinase, C-terminal domain |Pyruvate kinase, C-terminal domain |Escherichia coli [TaxId: 562]
d1iwea_ : (SER31) (VAL74) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Mouse (Mus musculus) [TaxId: 10090]
d1iwea_ : (GLU402) (PHE457) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Mouse (Mus musculus) [TaxId: 10090]
d3cddb2 : (GLN143) (THR179) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Shewanella oneidensis [TaxId: 70863]
d2ntmd_ : (GLU152) (MET202) [view usage] : d.153.2.1 |Ntn hydrolase-like |Archaeal IMP cyclohydrolase PurO |Archaeal IMP cyclohydrolase PurO |Hypothetical protein MTH1020 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d3mc0b2 : (ARG135) (ASP194) [view usage] : d.15.6.0 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3pv4a1 : (ASP299) (ASP340) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Legionella fallonii [TaxId: 96230]
d1w07a3 : (HIS246) (VAL272) [view usage] : e.6.1.2 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |acyl-CoA oxidase N-terminal domains |Acyl-coenzyme A oxidase 1, domains 1 and 2 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d6icda_ : (PRO102) (GLU154) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |Isocitrate dehydrogenase, ICDH |Escherichia coli [TaxId: 562]
d3logb_ : (SER16) (ALA58) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d2d4va_ : (GLY101) (GLU154) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Acidithiobacillus thiooxidans [TaxId: 930]
d2o5fa_ : (SER67) (SER123) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]
d2dsya1 : (GLY38) (PRO82) [view usage] : d.304.1.2 |TTHA1013/TTHA0281-like |TTHA1013/TTHA0281-like |TTHA0281-like |Hypothetical protein TTHA0281 |Thermus thermophilus [TaxId: 274]
d3j38h_ : (GLY87) (HIS155) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2ooxc_ : (VAL456) (ILE503) [view usage] : d.129.6.2 |TBP-like |KA1-like |Ssp2 C-terminal domain-like |Snf1-like protein kinase ssp2 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d3mfha2 : (LYS393) (GLY465) [view usage] : d.240.1.0 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ky9b1 : (LYS316) (LEU354) [view usage] : b.36.1.4 |PDZ domain-like |PDZ domain-like |HtrA-like serine proteases |Protease Do (DegP, HtrA), C-terminal domains |Escherichia coli [TaxId: 562]
d2j7qc1 : (ARG99) (ALA148) [view usage] : d.3.1.20 |Cysteine proteinases |Cysteine proteinases |M48USP-like |Tegument protein M48; N-terminal domain |Murine cytomegalovirus (MCMV) [TaxId: 10366]
d1dj2a_ : (GLN20) (TYR62) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1dj2a_ : (GLU385) (LYS443) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1dj3a_ : (ASN388) (LYS442) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Wheat (Triticum aestivum) [TaxId: 4565]
d3dbhf_ : (GLN351) (SER396) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2z22a_ : (LYS215) (GLU263) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Yersinia pestis [TaxId: 214092]
d3ewib_ : (LYS10) (ASP38) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.94, i.1, c.108, c.77, d.129, c.37, e.6, c.95, d.153, d.3, c.111, d.142, c.49, d.15, d.113, d.82, e.24, d.240, b.36,
d.161, b.106, d.304