Tableau information
Concept source: d2dnya_ amino acid (a.a.) range (THR445)(SER503)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR445) (ASN451) E1
(ASP459) (GLY474) H2
(ARG478) (GLU484) E3
(GLU493) (SER503) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 130.3° H2
E3 -40.7° 131.2° E3
E4 153.8° -43.5° 165.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3cqoa1 : (LYS11) (LEU58) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Morone saxatilis [TaxId: 34816]
d2ux9a1 : (LYS3) (ALA65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |Uncharacterized protein TTHA1431 |Thermus thermophilus [TaxId: 274]
d2ux9b_ : (LYS3) (ALA65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1yhqm1 : (VAL60) (ASN137) [view usage] : d.12.1.2 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |L15e |Ribosomal protein L15e |Haloarcula marismortui [TaxId: 2238]
d2cz8a1 : (LYS3) (ARG65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |Uncharacterized protein TTHA1431 |Thermus thermophilus [TaxId: 274]
d1moga_ : (VAL2) (GLU63) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |Flavin-binding protein dodecin |Halobacterium salinarum [TaxId: 2242]
d3oqta_ : (HIS4) (ARG66) [view usage] : d.230.2.0 |Dodecin subunit-like |Dodecin-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2yj0a_ : (HIS3) (ARG65) [view usage] : d.230.2.0 |Dodecin subunit-like |Dodecin-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2vyxb_ : (LYS3) (ARG65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1nj1a2 : (GLY429) (ARG479) [view usage] : d.68.5.1 |IF3-like |C-terminal domain of ProRS |C-terminal domain of ProRS |C-terminal domain of ProRS |Methanothermobacter thermautotrophicus [TaxId: 145262]
d2vyxa_ : (LYS3) (ARG65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2hvaa1 : (ARG125) (ALA190) [view usage] : d.60.1.4 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |SOUL heme-binding protein |Heme-binding protein 1 |Mouse (Mus musculus) [TaxId: 10090]
d2km8c2 : (GLY243) (ASP292) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1s1it_ : (ASN79) (ARG124) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xpwa_ : (GLY12) (CYS52) [view usage] : b.18.1.9 |Galactose-binding domain-like |Galactose-binding domain-like |APC10-like |Placental protein 25, pp25 |Human (Homo sapiens) [TaxId: 9606]
d1fjeb1 : (PRO13) (GLU62) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nucleolin |Golden hamster (Mesocricetus auratus) [TaxId: 10036]
d2gova1 : (GLY127) (VAL188) [view usage] : d.60.1.4 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |SOUL heme-binding protein |Heme-binding protein 1 |Mouse (Mus musculus) [TaxId: 10090]
d1ejia_ : (HIS357) (PRO406) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Mouse (Mus musculus) [TaxId: 10090]
d2fjza_ : (ALA132) (PRO188) [view usage] : d.230.3.1 |Dodecin subunit-like |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Human (Homo sapiens) [TaxId: 9606]
d1feud_ : (MET1) (ASP40) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
d2izpb_ : (PRO2199) (ILE2230) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Putative membrane antigen BipD |Burkholderia pseudomallei [TaxId: 28450]
d1owxa_ : (CYS232) (PHE275) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Lupus LA protein |Human (Homo sapiens) [TaxId: 9606]
d1s72m_ : (VAL60) (GLU130) [view usage] : d.12.1.2 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |L15e |Ribosomal protein L15e |Haloarcula marismortui [TaxId: 2238]
d2yj0b_ : (HIS3) (ARG65) [view usage] : d.230.2.0 |Dodecin subunit-like |Dodecin-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1q8ra_ : (MET53) (GLY118) [view usage] : d.79.6.1 |Bacillus chorismate mutase-like |Holliday junction resolvase RusA |Holliday junction resolvase RusA |Holliday junction resolvase RusA |Escherichia coli [TaxId: 562]
d4p1bh_ : (GLY37) (ASN72) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Toluene-4-monooxygenase system protein C, TmoC |Pseudomonas mendocina [TaxId: 300]
d2cc6a_ : (VAL2) (GLU63) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Halobacterium salinarum [TaxId: 478009]
d2go9a2 : (CYS81) (VAL129) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |U4/U6 snRNA-associated-splicing factor PRP24 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jj2l_ : (GLY59) (GLU130) [view usage] : d.12.1.2 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |L15e |Ribosomal protein L15e |Haloarcula marismortui [TaxId: 2238]
d2v19a1 : (LYS3) (ARG65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |Uncharacterized protein TTHA1431 |Thermus thermophilus [TaxId: 274]
d2v19b_ : (LYS3) (ARG65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2v94a1 : (GLY15) (TYR73) [view usage] : d.12.1.3 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |Ribosomal protein S24e |Ribosomal protein S24e |Pyrococcus abyssi [TaxId: 29292]
d1xrsb2 : (GLN35) (ASN84) [view usage] : d.230.4.1 |Dodecin subunit-like |D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain |D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain |D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain |Clostridium sticklandii [TaxId: 1511]
d1id0a_ : (ILE370) (ASP416) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase PhoQ domain |Escherichia coli [TaxId: 562]
d2dqnb2 : (GLU203) (ARG259) [view usage] : d.128.1.5 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |GatB/GatE catalytic domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d2ofna_ : (THR41) (LEU123) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2cz8b_ : (LYS3) (ARG65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2cq4a1 : (ARG150) (GLU197) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |RNA binding protein 23 |Human (Homo sapiens) [TaxId: 9606]
d2qmma1 : (PRO155) (SER201) [view usage] : c.116.1.7 |alpha/beta knot |alpha/beta knot |AF1056-like |Uncharacterized protein AF1056 |Archaeoglobus fulgidus [TaxId: 2234]
d2cz8d_ : (LYS3) (ARG65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1xl7a1 : (PHE274) (ASP326) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Peroxisomal carnitine O-octanoyltransferase, COT |Mouse (Mus musculus) [TaxId: 10090]
d4l0pa_ : (LEU42) (ARG83) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rsci_ : (PHE65) (HIS118) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Synechococcus sp., strain pcc 6301 [TaxId: 1131]
d3u5cy_ : (ALA19) (ASN77) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2jnaa1 : (THR40) (ASP93) [view usage] : d.230.6.1 |Dodecin subunit-like |YdgH-like |YdgH-like |Hypothetical protein STM0082 |Salmonella typhimurium [TaxId: 90371]
d2osda1 : (TYR97) (GLU156) [view usage] : d.278.1.3 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |MJ1460-like |Hypothetical protein MJ1460 |Methanococcus jannaschii [TaxId: 2190]
d2ux9c_ : (LYS3) (ALA65) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2hgfa_ : (LEU57) (PRO100) [view usage] : g.10.1.1 |Hairpin loop containing domain-like |Hairpin loop containing domain-like |Hairpin loop containing domain |Hepatocyte growth factor |Human (Homo sapiens) [TaxId: 9606]
d1bk8a_ : (LEU1) (ASN49) [view usage] : g.3.7.5 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Plant defensins |Antimicrobial protein 1 (AH-AMP1) |Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]
d1rbli_ : (PHE65) (HIS118) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Synechococcus sp., strain pcc 6301 [TaxId: 1131]
d2vx9a_ : (VAL2) (GLU63) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |automated matches |Halobacterium salinarum [TaxId: 478009]
d1feua_ : (MET1) (ASP40) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, d.68, d.58, i.1, d.122, b.18, c.43, d.278, c.116, d.79, d.128, g.10, d.26, d.73, b.33, d.12, g.3, d.230, d.60, b.53,
a.250