Tableau information
Concept source: d3sg0a_ amino acid (a.a.) range (VAL89)(VAL136)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL89) (LEU95) E1
(LEU95) (LYS110) H2
(PRO112) (MSE116) E3
(TRP132) (VAL136) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 157.3° H2
E3 -29.6° 173.1° E3
E4 -57.9° 143.4° -30.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4m98a_ : (ARG200) (GLY245) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Neisseria gonorrhoeae [TaxId: 242231]
d1s3la_ : (LYS92) (GLY138) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Putative phosphodiesterase MJ0936 |Methanococcus jannaschii [TaxId: 2190]
d1fj3a_ : (ILE39) (GLY123) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Thermolysin |Bacillus thermoproteolyticus [TaxId: 1427]
d3f49s_ : (SER161) (PRO201) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus amyloliquefaciens [TaxId: 1390]
d4m99a_ : (ARG200) (GLY245) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Neisseria gonorrhoeae [TaxId: 242231]
d1e0da1 : (ASN7) (GLY55) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD |Escherichia coli [TaxId: 562]
d2nmua1 : (SER9) (ASP51) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |Hypothetical protein STM3071 |Salmonella typhimurium [TaxId: 90371]
d3rg8c_ : (PRO59) (GLU116) [view usage] : c.23.8.0 |Flavodoxin-like |N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |automated matches |automated matches |Treponema denticola [TaxId: 158]
d1hdoa_ : (ILE6) (VAL52) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Biliverdin IX beta reductase |Human (Homo sapiens) [TaxId: 9606]
d1ofda3 : (CYS1) (ALA49) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Synechocystis sp. [TaxId: 1143]
d2ibsa1 : (GLY41) (ALA88) [view usage] : c.66.1.27 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |DNA methylase TaqI, N-terminal domain |DNA methylase TaqI, N-terminal domain |Thermus aquaticus [TaxId: 271]
d2jg3a1 : (GLY41) (LEU87) [view usage] : c.66.1.27 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |DNA methylase TaqI, N-terminal domain |automated matches |Thermus aquaticus [TaxId: 271]
d3sg0a_ : (VAL89) (VAL136) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d2csua1 : (LYS9) (LYS56) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Acetate-CoA ligase alpha chain, AcdA, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d2j8ib_ : (GLY-7) (GLY39) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |NP275-NP276 |Nostoc punctiforme [TaxId: 272131]
d3emda_ : (GLY75) (LYS129) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Wesselsbron virus [TaxId: 164416]
d1g38a1 : (GLY41) (LEU87) [view usage] : c.66.1.27 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |DNA methylase TaqI, N-terminal domain |DNA methylase TaqI, N-terminal domain |Thermus aquaticus [TaxId: 271]
d1rcua_ : (LEU38) (GLY83) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TM1055 |Thermotoga maritima [TaxId: 2336]
d3rg8a_ : (LYS60) (GLU116) [view usage] : c.23.8.0 |Flavodoxin-like |N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |automated matches |automated matches |Treponema denticola [TaxId: 158]
d3v0oa_ : (ASN113) (GLU174) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hx0a_ : (THR10) (ASP51) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |automated matches |Salmonella enterica [TaxId: 28901]
d1vffa1 : (PRO319) (ASP384) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Pyrococcus horikoshii [TaxId: 53953]
d1y81a1 : (ARG7) (ARG53) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Hypothetical protein PF0725 |Pyrococcus furiosus [TaxId: 2261]
d1dxya1 : (GLN146) (SER190) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |D-2-hydroxyisocaproate dehydrogenase |Lactobacillus casei [TaxId: 1582]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, b.81, c.2, d.159, c.68, c.66, d.92, c.93, c.23, d.153, c.41, c.129, c.5, d.290