Tableau information
Concept source: d4atfb_ amino acid (a.a.) range (LEU114)(SER149)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU114) (LYS118) E1
(LYS118) (TYR123) H2
(LEU129) (ARG135) E3
(ASP140) (SER149) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -71.6° H2
E3 130.4° 133.2° E3
E4 -49.5° -65.3° 161.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wi5a_ : (GLY223) (VAL270) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) |Human (Homo sapiens) [TaxId: 9606]
d2p19a1 : (ILE92) (ARG136) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Transcriptional regulator Cgl0157/Cg0196 |Corynebacterium glutamicum [TaxId: 1718]
d2p19c_ : (ILE92) (ARG136) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Transcriptional regulator Cgl0157/Cg0196 |Corynebacterium glutamicum [TaxId: 1718]
d4dh2c_ : (PHE110) (LYS162) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d1bcce1 : (SER72) (HIS100) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain |Chicken (Gallus gallus) [TaxId: 9031]
d3j39q_ : (PRO59) (ARG91) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2zi8b2 : (GLY165) (PRO206) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4atfc_ : (LEU114) (SER149) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |automated matches |Zobellia galactanivorans [TaxId: 63186]
d3j38y_ : (SER34) (ASP78) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2zyqa2 : (GLY165) (PRO206) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3mgab1 : (ARG48) (ALA86) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d1utya_ : (PHE8) (PHE45) [view usage] : b.147.1.1 |BTV NS2-like ssRNA-binding domain |BTV NS2-like ssRNA-binding domain |BTV NS2-like ssRNA-binding domain |Nonstructural protein NS2 |Bluetongue virus [TaxId: 40051]
d3agxa1 : (HIS166) (LYS210) [view usage] : b.4.1.0 |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k32a1 : (GLY804) (ASP853) [view usage] : b.36.1.3 |PDZ domain-like |PDZ domain-like |Tail specific protease PDZ domain |Tricorn protease |Thermoplasma acidophilum [TaxId: 2303]
d2xwtc_ : (THR190) (ASP219) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ly6a3 : (SER538) (GLU585) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d1o4za_ : (LEU114) (SER149) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |beta-Agarase A |Zobellia galactanivorans [TaxId: 63186]
d1h8ya_ : (SER20) (ASN54) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-13 [TaxId: 287]
d3qmna_ : (LYS85) (ARG125) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2q11a_ : (GLU116) (GLY177) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1yela1 : (GLU59) (HIS99) [view usage] : b.142.1.2 |DNA-binding pseudobarrel domain |DNA-binding pseudobarrel domain |B3 DNA binding domain |At1g16640 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4atfa_ : (LEU114) (SER149) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |automated matches |Zobellia galactanivorans [TaxId: 63186]
d2kq3a_ : (LEU7) (ASP95) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
d1clqa2 : (ILE779) (PRO849) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d2ywwa1 : (GLY62) (PRO99) [view usage] : d.58.2.0 |Ferredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1peua2 : (TYR365) (VAL394) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1jm1a_ : (PRO57) (ASP94) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Rieske protein II (SoxF) |Sulfolobus acidocaldarius [TaxId: 2285]
d1hrea_ : (HIS178) (PRO214) [view usage] : g.3.11.1 |Knottins (small inhibitors, toxins, lectins) |EGF/Laminin |EGF-type module |Heregulin-alpha, EGF-like domain |Human (Homo sapiens) [TaxId: 9606]
d1kv3a2 : (SER538) (GLU585) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d1edya_ : (GLY53) (GLU85) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |alpha-1-macroglobulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.10, d.58, i.1, b.29, b.50, b.40, c.7, b.2, d.32, b.1, d.150, b.36, b.33, g.3, b.4, d.190, b.142, b.147