Protein Concepts Dictionary

Tableau information

Concept source:  d2pkha1  amino acid (a.a.) range (ARG109)(ASN160)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: EHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ARG109)  (VAL114) E1
	  (GLY123)  (ALA129) H2
	  (GLN136)  (GLU147) E3
	  (VAL152)  (ASN160) E4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                          
H2     -117.2°   H2                   
E3      155.4°   87.1°   E3            
E4      -36.7°  -83.4°  165.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2p19a1 :     (ASP7)   (PRO58)   [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Transcriptional regulator Cgl0157/Cg0196 |Corynebacterium glutamicum [TaxId: 1718]
 d3l5za_ :    (GLU97)  (PRO148)   [view usage] : d.190.1.0 |Chorismate lyase-like |Chorismate lyase-like |automated matches |automated matches |Bacillus cereus [TaxId: 222523]
 d3bwgb2 :   (ASP174)  (ASN221)   [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Transcriptional regulator YydK |Bacillus subtilis [TaxId: 1423]
 d2nwia1 :    (LEU32)   (PRO77)   [view usage] : d.190.1.3 |Chorismate lyase-like |Chorismate lyase-like |AF1396-like |Hypothetical protein AF1396 |Archaeoglobus fulgidus [TaxId: 2234]
 d2nwif_ :    (LYS26)   (PRO77)   [view usage] : d.190.1.3 |Chorismate lyase-like |Chorismate lyase-like |AF1396-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
 d1l9ma4 :   (HIS330)  (SER370)   [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), TGase E3 [TaxId: 9606]
 d1teya1 :    (GLY68)  (TYR117)   [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Human (Homo sapiens) [TaxId: 9606]
 d1l9mb4 :   (HIS330)  (SER370)   [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), TGase E3 [TaxId: 9606]
 d2ogga1 :   (SER174)  (HIS223)   [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Trehalose operon transcriptional repressor TreR |Bacillus subtilis [TaxId: 1423]
 d1nugb4 :   (HIS330)  (SER370)   [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), TGase E3 [TaxId: 9606]
 d2a3zb_ :    (LEU92)  (HIS134)   [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Deoxyribonuclease I |Cow (Bos taurus) [TaxId: 9913]
 d3bwga2 :   (SER173)  (ASN221)   [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Transcriptional regulator YydK |Bacillus subtilis [TaxId: 1423]
 d1mk4a_ :     (HIS0)   (GLY58)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein YqiY |Bacillus subtilis [TaxId: 1423]
 d3cnvc_ :   (VAL198)  (ASP250)   [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Putative transcriptional regulator BB3683 |Bordetella bronchiseptica [TaxId: 518]
 d1t82c_ :    (PRO97)  (PRO143)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Putative thioesterase SO4397 |Shewanella oneidensis [TaxId: 70863]
 d2pkha1 :   (ARG109)  (ASN160)   [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Histidine utilization repressor HutC |Pseudomonas syringae pv. tomato [TaxId: 323]
 d2pkhb_ :   (HIS108)  (ASN160)   [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Histidine utilization repressor HutC |Pseudomonas syringae pv. tomato [TaxId: 323]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.151,     d.3,     b.1,   d.108,    d.38,   d.190